15 files changed, 0 insertions, 1141 deletions
diff --git a/sci-libs/hdf5/ChangeLog b/sci-libs/hdf5/ChangeLog
deleted file mode 100644
index 1c07588..0000000
--- a/sci-libs/hdf5/ChangeLog
+++ /dev/null
@@ -1,386 +0,0 @@
-# ChangeLog for sci-libs/hdf5
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/ChangeLog,v 1.73 2011/07/08 11:24:29 xarthisius Exp $
-
-  08 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.7.ebuild:
-  Export mpi wrappers again due to clash with fortran-2.eclass. Fixes bug
-  374431 by Ruggero Morsucci <mors_1tflops@yahoo.it>
-
-  06 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
-  Fix use fortran check in pkg_setup
-
-  26 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild, metadata.xml:
-  Bumped EAPI and corrected slots
-
-  22 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
-  Conditionally check for fortran support, #372557
-
-  21 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
-  Add dependency on virtual/fortran
-
-  21 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
-  Added fortran-2.eclass support
-
-  08 Jun 2011; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
-  Remove HPPA keywording.
-
-*hdf5-1.8.7 (13 May 2011)
-
-  13 May 2011; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5_p1-r1.ebuild,
-  +hdf5-1.8.7.ebuild:
-  Version bump. Exporting mpi wrappers is no longer necessary as hdf5 defaults
-  to them if --enable-parallel is set. Drop old.
-
-*hdf5-1.8.6 (19 Feb 2011)
-
-  19 Feb 2011; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.6.ebuild:
-  Version bump
-
-*hdf5-1.8.5_p1-r1 (05 Nov 2010)
-
-  05 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5_p1.ebuild,
-  +hdf5-1.8.5_p1-r1.ebuild, +files/hdf5-1.8.5-implicits.patch:
-  Fix implicits.
-
-*hdf5-1.8.5_p1 (05 Nov 2010)
-
-  05 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5.ebuild,
-  +hdf5-1.8.5_p1.ebuild:
-  Version bump. Drop old.
-
-  09 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.6.4.ebuild,
-  -files/hdf5-1.8.3-destdir.patch, -files/hdf5-1.8.3-gnutools.patch,
-  -files/hdf5-1.8.3-signal.patch, metadata.xml:
-  Remove ancient
-
-  09 Jul 2010; Samuli Suominen <ssuominen@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  ppc64 stable wrt #299710
-
-  03 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.5.ebuild,
-  metadata.xml:
-  Adding debug flag
-
-  20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org>
-  -files/hdf5-1.6.6-gcc4.3.patch, -hdf5-1.6.7.ebuild,
-  -files/hdf5-gcc4.3.3-fix.patch, -hdf5-1.8.4_p1.ebuild,
-  -files/hdf5-mpich2.patch, -hdf5-1.6.2.ebuild:
-  Removing old ebuild and obsolete patches
-
-  20 Jun 2010; Raúl Porcel <armin76@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  alpha/ia64/sparc stable wrt #299710
-
-  17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  Remove dep on sys-cluster/lam-mpi, see #324415.
-
-*hdf5-1.8.5 (16 Jun 2010)
-
-  16 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.5.ebuild,
-  +files/hdf5-1.8.5-noreturn.patch:
-  Version bump. Fixes bug 324119
-
-  04 May 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  Changed SRC_URI, per bug #317649
-
-*hdf5-1.8.4_p1 (04 May 2010)
-
-  04 May 2010; Sébastien Fabbro <bicatali@gentoo.org>
-  -hdf5-1.6.5-r1.ebuild, -hdf5-1.6.6.ebuild, -hdf5-1.8.3-r1.ebuild,
-  files/hdf5-1.8.3-as-needed.patch, +hdf5-1.8.4_p1.ebuild:
-  Version bump. Important update mainly for netcdf4 users
-
-  10 Feb 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  Added some warnings for mpi
-
-  05 Feb 2010; Raúl Porcel <armin76@gentoo.org> hdf5-1.8.4-r1.ebuild,
-  +files/hdf5-1.8.4-sigbus.patch:
-  Add patch from debian for unaligned acceses, alpha/ia64/sparc stable wrt
-  #299710
-
-  21 Jan 2010; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  Stable for HPPA (bug #299710).
-
-  20 Jan 2010; Markus Meier <maekke@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  amd64 stable, bug #299710
-
-  19 Jan 2010; nixnut <nixnut@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  ppc stable #299710
-
-  15 Jan 2010; Christian Faulhammer <fauli@gentoo.org> hdf5-1.8.4-r1.ebuild:
-  stable x86, bug 299710
-
-  11 Dec 2009; Sébastien Fabbro <bicatali@gentoo.org>
-  files/hdf5-1.8.3-destdir.patch, hdf5-1.8.4-r1.ebuild:
-  Removed destdir patch, now done with sed's. This also solves bug #286492
-
-*hdf5-1.8.4-r1 (03 Dec 2009)
-
-  03 Dec 2009; Sébastien Fabbro <bicatali@gentoo.org> -hdf5-1.8.4.ebuild,
-  +hdf5-1.8.4-r1.ebuild, +files/hdf5-1.8.4-gnutools.patch,
-  +files/hdf5-1.8.4-scaleoffset.patch:
-  Forced compilation -O0 on some buggy files, fixed some tests,
-  re-introduced the fortran+mpi possibility, and keyworded ia64. Thanks
-  Kacper Kowalik to do all this.
-
-  24 Nov 2009; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.7.ebuild:
-  Added a few improvements.
-
-*hdf5-1.8.4 (20 Nov 2009)
-
-  20 Nov 2009; Sébastien Fabbro <bicatali@gentoo.org> +hdf5-1.8.4.ebuild:
-  Version bump. mpi and fortran do not compile together, so disable
-  simultaneous mpi/fortran uses until patch
-
-  12 Oct 2009; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.3-r1.ebuild:
-  Stable for HPPA (bug #245707).
-
-  02 Oct 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3-r1.ebuild,
-  files/hdf5-1.8.3-destdir.patch:
-  Set CC=mpicc when building with mpi enabled (bug #286353), added
-  --enabled-shared which was disabled with mpi enabled (bug #287124), and
-  added slashes in destdir patch
-
-  01 Oct 2009; Tobias Klausmann <klausman@gentoo.org> hdf5-1.8.3-r1.ebuild:
-  Keyworded on alpha, bug #285148
-
-  23 Sep 2009; Patrick Lauer <patrick@gentoo.org> hdf5-1.6.6.ebuild,
-  hdf5-1.6.7.ebuild:
-  Remove virtual/libc
-
-  17 Sep 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3-r1.ebuild:
-  Removed the forced PIC configure line which was compiling static libraries
-  with PIC
-
-*hdf5-1.8.3-r1 (15 Sep 2009)
-
-  15 Sep 2009; Steve Arnold <nerdboy@gentoo.org> -hdf5-1.8.3.ebuild,
-  +hdf5-1.8.3-r1.ebuild:
-  Updated to install the shared libs correctly.  This allows other packages
-  that link against hdf5 to actually build...
-
-  11 Sep 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3.ebuild,
-  files/hdf5-1.8.3-as-needed.patch:
-  More as-needed fixes, thanks to Kacper Kowalik closing bug #284518
-
-  24 Aug 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3.ebuild:
-  Replaced use-based dependency for virtual by atom based ones. Thanks
-  Mr_Bones.
-
-*hdf5-1.8.3 (18 Aug 2009)
-
-  18 Aug 2009; Sébastien Fabbro <bicatali@gentoo.org> +hdf5-1.8.3.ebuild,
-  +files/hdf5-1.8.3-as-needed.patch, +files/hdf5-1.8.3-destdir.patch,
-  +files/hdf5-1.8.3-gnutools.patch, +files/hdf5-1.8.3-includes.patch,
-  +files/hdf5-1.8.3-noreturn.patch, +files/hdf5-1.8.3-signal.patch,
-  metadata.xml:
-  Version bump. Many fixes and cleanups, rewrote ebuild from scratch,
-  merging from science overlay
-
-  04 Feb 2009; Patrick Lauer <patrick@gentoo.org>
-  +files/hdf5-gcc4.3.3-fix.patch, hdf5-1.6.7.ebuild:
-  fortify_sources fix, patch from Simon C. Ion, closes #257177
-
-  23 Jan 2009; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.7.ebuild:
-  Updated for upstream changes in test-tools and a more appropriate sed 
-  invocation.
-
-*hdf5-1.6.7 (17 Aug 2008)
-
-  17 Aug 2008; Markus Dittrich <markusle@gentoo.org> -hdf5-1.6.5.ebuild,
-  +hdf5-1.6.7.ebuild:
-  Version bump and replaced "which" with "type -p". Removed obsolete
-  ebuild.
-
-  07 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
-  Add USE flag description to metadata wrt GLEP 56.
-
-  22 Jun 2008; Markus Dittrich <markusle@gentoo.org>
-  +files/hdf5-1.6.6-gcc4.3.patch, hdf5-1.6.6.ebuild:
-  Added patch to allow compilation with gcc-4.3 (fixes bug #228341). 
-  Thanks much to Pinky <master_up@post.cz> for his patch.
-
-  13 Jun 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
-  Removed sparc specific mask of mpi in DEPEND in favor of package.use.mask
-  (see bug #217854).
-
-  06 Jun 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.5-r1.ebuild,
-  hdf5-1.6.6.ebuild:
-  Removed quotes around myconf since they break configure 
-  (see bug #225021). Thanks much to Nuno Sucena Almeida 
-  <slug@aeminium.org> for pointing this out.
-
-  04 Jun 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild:
-  Adding ~hppa back in (doh! needed a full tree updated)
-
-  04 Jun 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild:
-  Fixed some build and test script issues, and updated the test function so 
-  the MPI tests work on a single CPU box.
-
-  15 Apr 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
-  Fixed messed up symlinks for libh5test.so (see bug #217720).
-  Also re-added spark KEYWORD without mpi support for now.
-
-  09 Apr 2008; Jeroen Roovers <jer@gentoo.org> hdf5-1.6.6.ebuild:
-  Marked ~hppa (bug #216855).
-
-  04 Feb 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild:
-  fixed QA issues and added additional tools via use flag
-
-  06 Dec 2007; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
-  Fixed misplaced quotation mark (fixes bug #201479).
-
-  05 Dec 2007; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
-  Removed quotes around myconf since they confuse configure (fixes bug #201205).
-
-*hdf5-1.6.6 (03 Dec 2007)
-
-  03 Dec 2007; Steve Arnold <nerdboy@gentoo.org> +files/hdf5-mpich2.patch,
-  +hdf5-1.6.6.ebuild:
-  Updated to latest upstream release, with mpi fixes, however, this version
-  is locked to mpich2-1.0.6 due to pvfs2, however, sparc is dropped until
-  the parallel I/O thing is worked out with other MPI libs.
-  Tests work, including mpi (but needs testing in a real cluster).
-
-  01 Nov 2006; Donnie Berkholz <dberkholz@gentoo.org>; ChangeLog:
-  Update for my nick change spyderous -> dberkholz.
-
-  13 Jul 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.5-r1.ebuild:
-  removed pgi fortran detection
-
-  08 Jul 2006; Markus Rothe <corsair@gentoo.org> hdf5-1.6.4.ebuild:
-  Stable on ppc64
-
-  28 Jun 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.5-r1.ebuild:
-  Reverted to original (and standard) library location; even though it
-  was much tidier, it was causing linkage issues...
-
-*hdf5-1.6.5-r1 (24 Jun 2006)
-
-  24 Jun 2006; Steve Arnold <nerdboy@gentoo.org> +files/mpd.conf,
-  hdf5-1.6.5.ebuild, +hdf5-1.6.5-r1.ebuild:
-  Updated for bug 134439, fortran support, tests, and creeping complexity.
-  Added use flags and logic for incompatible configure options, and support
-  for additional Fortran compilers (currently only tested with gfortran).
-  See comments and einfo for more details.  Backport install fixes.  Also
-  made SHLIB change for issue below (bug #118777).
-
-  14 Jun 2006; Ferris McCormick <fmccor@gentoo.org> hdf5-1.6.5.ebuild:
-  Add ~sparc keyword, closing Bug #118777 --- but please see Comments 4 and 5
-  on the bug for conditions under which hdf5 should be built.  (USE flags and
-  environment variables curiosities.)
-
-*hdf5-1.6.5 (25 May 2006)
-
-  25 May 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.4.ebuild,
-  +hdf5-1.6.5.ebuild:
-  Early stable bump for gdal (required), plus new testing version
-  (since the only real issue besides the sparc bug was the mpi thing).
-  To do: 1) resolve virtual/mpi issues for ppc64 and others
-	 2) need fix for buss error on sparc
-         3) get szip support working for other arches
-
-  21 May 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.2.ebuild,
-  hdf5-1.6.4.ebuild:
-  Updated to fix a few minor odds and ends (extra configure options,
-  get_libdir, etc).  Verified working with mpich2-1.0.3 (bug #107161).
-  Need to stablize for gdal; also needs some work on other arches 
-  (eg, the sparc bug #118777).  Go back to virtual/mpi when deps are
-  fixed (mpich is dorked).
-
-  17 Mar 2006; Markus Rothe <corsair@gentoo.org> hdf5-1.6.4.ebuild:
-  Added ~ppc64; bug #126527
-
-  14 Feb 2006; Donnie Berkholz <dberkholz@gentoo.org>; hdf5-1.6.4.ebuild:
-  Use virtual/mpi instead of an || for lam-mpi and mpich. It caused issues
-  with octave, reported by humpback@gentoo.org.
-
-  16 Dec 2005; Diego Pettenò <flameeyes@gentoo.org> hdf5-1.6.4.ebuild:
-  Remove --with-gnu-ld option, bug #108386.
-
-  11 Sep 2005; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.2.ebuild:
-  stable bump for sparc
-
-  18 Apr 2005; Joseph Jezak <josejx@gentoo.org> hdf5-1.6.2.ebuild:
-  Marked ppc stable.
-
-*hdf5-1.6.4 (17 Apr 2005)
-
-  17 Apr 2005; Olivier Fisette <ribosome@gentoo.org> -hdf5-1.4.5.ebuild,
-  -hdf5-1.6.0.ebuild, -hdf5-1.6.1.ebuild, +hdf5-1.6.4.ebuild:
-  Removed obsolete versions.
-
-*hdf5-1.6.4 (17 Apr 2005)
-
-  17 Apr 2005; Olivier Fisette <ribosome@gentoo.org> +hdf5-1.6.4.ebuild:
-  New version. Added MPI support.
-
-  01 Apr 2005; Aron Griffis <agriffis@gentoo.org> hdf5-1.6.2.ebuild:
-  stable on ia64
-
-  29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
-  Change encoding to UTF-8 for GLEP 31 compliance
-
-*hdf5-1.6.2 (28 Dec 2004)
-
-  28 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +hdf5-1.4.5.ebuild, +hdf5-1.6.0.ebuild, +hdf5-1.6.1.ebuild,
-  +hdf5-1.6.2.ebuild:
-  Moved from dev-libs/hdf5 to sci-libs/hdf5.
-
-  25 Jun 2004; Danny van Dyk <kugelfang@gentoo.org> hdf5-1.6.2.ebuild:
-  Marked stable on amd64.
-
-  15 Jun 2004; Michael Sterrett <mr_bones_@gentoo.org> hdf5-1.4.5.ebuild,
-  hdf5-1.6.0.ebuild, hdf5-1.6.1.ebuild, hdf5-1.6.2.ebuild:
-  PROVIDE is for virtuals
-
-  05 May 2004; Bryan Østergaard <kloeri@gentoo.org> hdf5-1.6.2.ebuild:
-  Stable on alpha.
-
-  03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> hdf5-1.6.2.ebuild:
-  Marked stable on x86.
-
-*hdf5-1.6.2 (03 Mar 2004)
-
-  3 Mar 2004; <pbienst@gentoo.org> hdf5-1.6.2.ebuild:
-  New version.
-
-  3 Mar 2004; <pbienst@gentoo.org> hdf5-1.6.1.ebuild:
-  Mark stable on x86.
-
-  18 Feb 2004; <augustus@gentoo.org> hdf5-1.6.1.ebuild:
-  Added ~amd64 to keywords.
-
-  16 Feb 2004; Aron Griffis <agriffis@gentoo.org> hdf5-1.6.1.ebuild:
-  add ~alpha and ~ia64
-
-  15 Feb 2004; Jason Wever <weeve@gentoo.org> hdf5-1.6.1.ebuild:
-  Added ~sparc keyword to fix broken dependencies of app-sci/octave.
-
-*hdf5-1.6.1 (06 jan 2004)
-
-  06 Jan 2004; George Shapovalov <george@gentoo.org> hdf5-1.6.1.ebuild :
-  new version (#35792) thanks to Peter Bienstman <Peter.Bienstman@rug.ac.be> for notification
-
-*hdf5-1.6.0 (24 Aug 2003)
-
-  24 Aug 2003; George Shapovalov <george@gentoo.org> hdf5-1.6.0.ebuild :
-  added few chenges from #21071, added ssl to IUSE
-  thanks to Donald Giuliano <guido@ou.edu> for some configure flags suggestions
-
-  24 Aug 2003; George Shapovalov <george@gentoo.org> hdf5-1.6.0.ebuild :
-  new version (#25365),
-  this one installs examples, and of course in a wrong place :), had to fix location.
-  thanks to James Cloos <cloos@jhcloos.com> for notification
-
-*hdf5-1.4.5 (19 Jun 2003)
-
-  19 Jun 2003; George Shapovalov <george@gentoo.org> hdf5-1.4.5.ebuild, Manifest, files/{digest-hdf5-1.4.5} :
-  initial release (#21071)
-  HDF5 is a general purpose library and file format for storing scientific data.
-  ebuild submitted by Castel?o <castelao@oceanologia.net> and Shaun Cloherty <s.cloherty@gsbme.unsw.edu.au>
diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest
deleted file mode 100644
index bdd9162..0000000
--- a/sci-libs/hdf5/Manifest
+++ /dev/null
@@ -1,17 +0,0 @@
-AUX hdf5-1.8.3-as-needed.patch 1821 SHA1 b295f26b8d39fae21201449441a8ac3c0c699048 SHA256 6f03f955186e2e2870517580bd14a637e2cf0206e7547184948653e04c464bb3
-AUX hdf5-1.8.3-includes.patch 398 SHA1 339137d04a803e25a0cafaa4f4d167a4cbc9a7ae SHA256 cd82d8b3817d83d59054a2a32ce44aca060157095875f6e91c560ab830b32561
-AUX hdf5-1.8.3-noreturn.patch 3222 SHA1 c5d8f7528fbe5c0bde0cb0ac5c1dd189559ac140 SHA256 d902cfbda0382b8998506ea765d0795937485c44d8824051275ad668bcbd6565
-AUX hdf5-1.8.4-gnutools.patch 4607 SHA1 8aa01c68f788bfedb490dafd0252970105810eac SHA256 d4f989f289e7fb3ee8e585b10232811c17588b730013698fc439cc0fdabcb252
-AUX hdf5-1.8.4-scaleoffset.patch 1098 SHA1 29be6d6cb7de5db5e10429879f9d6673b6af1519 SHA256 596568d5cf56eba73de4e88a3e7aa0c8c13f3660279ffda783e2074e846a9b2d
-AUX hdf5-1.8.4-sigbus.patch 779 SHA1 3fc4c90ac42b9a59f26a459e6faf6f7410b87a9a SHA256 69c0ef464d99b6c2bd3a959b8210e7772a662054b481bed7775ec21c731bf106
-AUX hdf5-1.8.5-implicits.patch 1782 SHA1 eda61db0fafdc738db992fc055a9ad9626743872 SHA256 cd352f026daabba1c1a17725ebbc21a59015d3103697fd6e1181ea1998c07bb3
-AUX hdf5-1.8.5-noreturn.patch 1477 SHA1 88eee2a0bb02512795a61f0ceb9d54f8df454e31 SHA256 7278c504b0e252ea5d0a9d7de5b332f0f1c0981a441efb286864b9599790c0b2
-AUX mpd.conf 48 SHA1 244eee76dbf4ff269e4489d5cc7c3577c6c1fa6b SHA256 ae740cacaf2cb798921cb2092f5af98de67445e27af3f88858f3e6d2bbb127f4
-DIST hdf5-1.8.4.tar.gz 7181176 RMD160 e448e2326b55aa89ff0bd7488cd4291d6c5485ee SHA1 37877e29c49a6af3e23aa9ad798ef12b8ba1c05c SHA256 a992fce9387a17f175b3b188dc2a42f545a3057aeb141beb3fc3361c7521f465
-DIST hdf5-1.8.6.tar.bz2 5521674 RMD160 e0feec256e61e4947367a2144d9835f569035577 SHA1 348bd881c03a9568ac4ea9071833d6119c733757 SHA256 585ddb775a2aa752ebf673f972b90fb14f3732f5f1806255d101d7adc9a53004
-DIST hdf5-1.8.7.tar.bz2 5710170 RMD160 34641bf8e664c3b3382d1346a65e2f5c3eb485ee SHA1 be1daff26f066aca0b5be52d86dada6757fc4b95 SHA256 771761c9bec30b9a4137fa59ef88fdafdb0f4f35d1db0fd655f2591d19570fec
-EBUILD hdf5-1.8.4-r1.ebuild 3134 SHA1 9f01a942144e3a1cdf8d9eea9b3e3620cd180892 SHA256 89aa8ed18e2d68e4c55d8f24c0db221f6e3f13d056f4f14eb29016dffddcdda7
-EBUILD hdf5-1.8.6.ebuild 3101 SHA1 46012018d70646e025f4b19335eb77e147cc4c53 SHA256 aa9c4609c90b82561086f5cbb643fad56b4f1b84e26098c985d260e6fbf23d68
-EBUILD hdf5-1.8.7.ebuild 3014 SHA1 df19fe7c3c9b89ee4e85aa76a39087434a955025 SHA256 70b8a70cc46326ec4e1c281b4304c07b8628b197fe79d8a97553bca67d2cac69
-MISC ChangeLog 14930 SHA1 8fbe3de9fd6de412e096358132bbe0fd43b3735f SHA256 89356b57b866ba734307a911ba3fb63b0f1af7a1375b106b5214b5b8ea5c8238
-MISC metadata.xml 447 SHA1 5e9be3a88b19d1651aef3f867829c3e25f2e6a16 SHA256 1f01480c1833905629ecb1defd9fd0d12355a49929fb0277dd342d3012cec4cc
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch b/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch
deleted file mode 100644
index 6b1f438..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch
+++ /dev/null
@@ -1,41 +0,0 @@
---- fortran/src/Makefile.am.orig	2009-04-15 19:10:01.053733251 +0100
-+++ fortran/src/Makefile.am	2009-04-15 19:12:49.874557795 +0100
-@@ -66,6 +66,8 @@
-          H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c        \
-          $(PARALLEL_COND_SRC)
- 
-+libhdf5_fortran_la_LIBADD = $(top_builddir)/src/libhdf5.la
-+
- # h5fc is generated during configure.
- # Remove it only when distclean.
- DISTCLEANFILES=h5fc
---- hl/fortran/src/Makefile.am.orig	2009-04-15 19:10:01.245748616 +0100
-+++ hl/fortran/src/Makefile.am	2009-04-15 19:30:56.042226227 +0100
-@@ -43,6 +43,7 @@
- 
- libhdf5hl_fortran_la_SOURCES=H5LTfc.c  H5IMfc.c H5IMcc.c H5TBfc.c H5LTff.f90  \
-                 H5IMff.f90 H5TBff.f90
-+libhdf5hl_fortran_la_LIBADD=$(top_builddir)/hl/src/libhdf5_hl.la
- 
- # Fortran module files can have different extensions and different names
- # (e.g., different capitalizations) on different platforms.  Write rules
---- hl/c++/src/Makefile.am.orig	2009-04-15 19:10:01.249750013 +0100
-+++ hl/c++/src/Makefile.am	2009-04-15 20:16:08.812068687 +0100
-@@ -35,6 +35,7 @@
- # Source files for the library
- # At the moment, only the H5PT Packet Table has a C++ API.
- libhdf5_hl_cpp_la_SOURCES=H5PacketTable.cpp
-+libhdf5_hl_cpp_la_LIBADD=$(top_builddir)/hl/src/libhdf5_hl.la
- 
- # Public headers
- include_HEADERS=H5PacketTable.h
---- hl/src/Makefile.am.orig	2009-05-13 17:03:11.000000000 +0200
-+++ hl/src/Makefile.am	2009-09-10 19:22:57.489698969 +0200
-@@ -31,6 +31,7 @@
- libhdf5_hl_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
- 
- libhdf5_hl_la_SOURCES=H5DS.c H5IM.c H5LT.c H5LTanalyze.c H5LTparse.c H5PT.c H5TB.c
-+libhdf5_hl_la_LIBADD=$(top_builddir)/src/libhdf5.la
- 
- # Public header files (to be installed)
- include_HEADERS=hdf5_hl.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch b/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch
deleted file mode 100644
index 5e87f6c..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- hdf5-1.8.3.orig/src/H5E.c	2009-04-15 19:10:01.081735486 +0100
-+++ hdf5-1.8.3/src/H5E.c	2009-04-15 20:02:06.708712912 +0100
-@@ -54,6 +54,8 @@
- /***********/
- /* Headers */
- /***********/
-+#define _GNU_SOURCE
-+#include <stdio.h>
- #include "H5private.h"		/* Generic Functions			*/
- #include "H5Iprivate.h"		/* IDs                                  */
- #include "H5Epkg.h"		/* Error handling		  	*/
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch b/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch
deleted file mode 100644
index 27b6f9b..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch
+++ /dev/null
@@ -1,92 +0,0 @@
-diff -Nur hdf5-1.8.3.orig/c++/src/H5AbstractDs.cpp hdf5-1.8.3/c++/src/H5AbstractDs.cpp
---- hdf5-1.8.3.orig/c++/src/H5AbstractDs.cpp	2009-04-15 19:10:01.061734089 +0100
-+++ hdf5-1.8.3/c++/src/H5AbstractDs.cpp	2009-04-16 10:10:56.263885963 +0100
-@@ -85,6 +85,8 @@
-       else if (fromClass() == "Attribute")
- 	 throw DataTypeIException("Attribute::getTypeClass", "H5Tget_class returns H5T_NO_CLASS");
-    }
-+
-+   return (type_class);
- }
- 
- //--------------------------------------------------------------------------
-diff -Nur hdf5-1.8.3.orig/hl/src/H5LTanalyze.c hdf5-1.8.3/hl/src/H5LTanalyze.c
---- hdf5-1.8.3.orig/hl/src/H5LTanalyze.c	2009-04-15 19:10:01.221747499 +0100
-+++ hdf5-1.8.3/hl/src/H5LTanalyze.c	2009-04-16 10:10:56.267887639 +0100
-@@ -2329,7 +2329,7 @@
-    return ret;
- }
- 
--int H5LTyyerror(char *msg)
-+void H5LTyyerror(char *msg)
- {
-    printf("ERROR: %s before \"%s\".\n", msg, yytext);
- }
-diff -Nur hdf5-1.8.3.orig/hl/src/H5LTanalyze.l hdf5-1.8.3/hl/src/H5LTanalyze.l
---- hdf5-1.8.3.orig/hl/src/H5LTanalyze.l	2009-04-15 19:10:01.221747499 +0100
-+++ hdf5-1.8.3/hl/src/H5LTanalyze.l	2009-04-16 10:10:56.267887639 +0100
-@@ -181,7 +181,7 @@
-    return ret;
- }
- 
--int H5LTyyerror(char *msg)
-+void H5LTyyerror(char *msg)
- {
-    printf("ERROR: %s before \"%s\".\n", msg, yytext);
- }
-diff -Nur hdf5-1.8.3.orig/hl/src/H5LTparse.c hdf5-1.8.3/hl/src/H5LTparse.c
---- hdf5-1.8.3.orig/hl/src/H5LTparse.c	2009-04-15 19:10:01.221747499 +0100
-+++ hdf5-1.8.3/hl/src/H5LTparse.c	2009-04-16 10:10:56.267887639 +0100
-@@ -64,7 +64,7 @@
- #include<hdf5.h>
- 
- extern int yylex();
--extern int yyerror(char *);
-+extern void yyerror(char *);
- 
- #define STACK_SIZE      16
- 
-diff -Nur hdf5-1.8.3.orig/test/dt_arith.c hdf5-1.8.3/test/dt_arith.c
---- hdf5-1.8.3.orig/test/dt_arith.c	2009-04-15 19:10:01.121739118 +0100
-+++ hdf5-1.8.3/test/dt_arith.c	2009-04-16 10:10:56.271887918 +0100
-@@ -3408,6 +3408,7 @@
-     else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL)
-         return 1;
- #endif
-+    return 1;
- }
- 
- 
-diff -Nur hdf5-1.8.3.orig/tools/h5dump/h5dump.c hdf5-1.8.3/tools/h5dump/h5dump.c
---- hdf5-1.8.3.orig/tools/h5dump/h5dump.c	2009-04-15 19:10:01.141740794 +0100
-+++ hdf5-1.8.3/tools/h5dump/h5dump.c	2009-04-16 10:10:56.275888757 +0100
-@@ -602,6 +602,7 @@
-  *
-  *-------------------------------------------------------------------------
-  */
-+static void leave(int ret) __attribute__ ((__noreturn__));
- static void
- leave(int ret)
- {
-diff -Nur hdf5-1.8.3.orig/tools/h5ls/h5ls.c hdf5-1.8.3/tools/h5ls/h5ls.c
---- hdf5-1.8.3.orig/tools/h5ls/h5ls.c	2009-04-15 19:10:01.165741353 +0100
-+++ hdf5-1.8.3/tools/h5ls/h5ls.c	2009-04-16 10:10:56.279888477 +0100
-@@ -2147,6 +2147,7 @@
-  *
-  *-------------------------------------------------------------------------
-  */
-+static void leave(int ret) __attribute__ ((__noreturn__));
- static void
- leave(int ret)
- {
-diff -Nur hdf5-1.8.3.orig/tools/h5stat/h5stat.c hdf5-1.8.3/tools/h5stat/h5stat.c
---- hdf5-1.8.3.orig/tools/h5stat/h5stat.c	2009-04-15 19:10:01.181742750 +0100
-+++ hdf5-1.8.3/tools/h5stat/h5stat.c	2009-04-16 10:10:56.279888477 +0100
-@@ -181,6 +181,7 @@
-     { NULL, 0, '\0' }
- };
- 
-+static void leave(int ret) __attribute__ ((__noreturn__));
- static void
- leave(int ret)
- {
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch b/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch
deleted file mode 100644
index 2843afb..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch
+++ /dev/null
@@ -1,65 +0,0 @@
---- hdf5-1.8.4.orig/src/Makefile.am	2009-11-10 22:12:02.000000000 +0100
-+++ hdf5-1.8.4/src/Makefile.am	2009-12-03 13:13:36.902083292 +0100
-@@ -26,14 +26,52 @@
- # Use -g to force no optimization since many compilers (e.g., Intel) takes
- # a long time to compile it with any optimization on.  H5detect is used
- # to generate H5Tinit.c once. So, optimization is not critical.
-+# -O0 is required for >= gcc4.3
- noinst_PROGRAMS = H5detect
--H5detect_CFLAGS = -g $(AM_CFLAGS)
-+H5detect_CFLAGS = -g -O0
-+
-+# Automake doesn't have a way to build with no optimization
-+# See http://sources.redhat.com/ml/automake/2002-08/msg00082.html
-+# This is the automake-produced rule with $(CFLAGS) removed
-+H5detect_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
-+	--mode=link $(CCLD) $(H5detect_CFLAGS) $(AM_LDFLAGS) \
-+	$(LDFLAGS) -o $@
-+
-+H5detect-H5detect.o: H5detect.c
-+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -MT H5detect-H5detect.o -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c
-+@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='H5detect.c' object='H5detect-H5detect.o' libtool=no @AMDEPBACKSLASH@
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c
-+
-+H5detect-H5detect.obj: H5detect.c
-+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -MT H5detect-H5detect.obj -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi`
-+@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='H5detect.c' object='H5detect-H5detect.obj' libtool=no @AMDEPBACKSLASH@
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi`
-+
-+noinst_LTLIBRARIES = libH5Tconv.la
-+libH5Tconv_la_SOURCES = H5Tconv.c
-+libH5Tconv_la_CFLAGS =  -g -O0
-+libH5Tconv_la_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) \
-+	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(libH5Tconv_la_CFLAGS) \
-+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
-+
-+libH5Tconv_la-H5Tconv.lo: H5Tconv.c
-+@am__fastdepCC_TRUE@	$(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libH5Tconv_la_CFLAGS) -MT libH5Tconv_la-H5Tconv.lo -MD -MP -MF $(DEPDIR)/libH5Tconv_la-H5Tconv.Tpo -c -o libH5Tconv_la-H5Tconv.lo `test -f 'H5Tconv.c' || echo '$(srcdir)/'`H5Tconv.c
-+@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/libH5Tconv_la-H5Tconv.Tpo $(DEPDIR)/libH5Tconv_la-H5Tconv.Plo
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='H5Tconv.c' object='libH5Tconv_la-H5Tconv.lo' libtool=yes @AMDEPBACKSLASH@
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-+@am__fastdepCC_FALSE@	$(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libH5Tconv_la_CFLAGS) -c -o libH5Tconv_la-H5Tconv.lo `test -f 'H5Tconv.c' || echo '$(srcdir)/'`H5Tconv.c
-+
- 
- # Our main target, the HDF5 library
- lib_LTLIBRARIES=libhdf5.la
- 
- # Add libtool numbers to the HDF5 library (from config/lt_vers.am)
- libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
-+libhdf5_la_LIBADD = libH5Tconv.la
- 
- # H5Tinit.c is a generated file, and should be cleaned.
- MOSTLYCLEANFILES=H5Tinit.c
-@@ -89,7 +127,7 @@
-         H5S.c H5Sall.c H5Sdbg.c H5Shyper.c H5Smpio.c H5Snone.c H5Spoint.c \
-         H5Sselect.c H5Stest.c H5SL.c H5SM.c H5SMbtree2.c \
-         H5SMcache.c H5SMtest.c H5ST.c \
--        H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c H5Tconv.c \
-+        H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c \
-         H5Tcset.c H5Tdbg.c H5Tdeprec.c H5Tenum.c H5Tfields.c \
-         H5Tfixed.c \
-         H5Tfloat.c H5Tinit.c H5Tnative.c H5Toffset.c H5Toh.c \
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch b/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch
deleted file mode 100644
index be52280..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- hdf5-1.8.4.orig/test/dsets.c	2009-11-10 22:11:59.000000000 +0100
-+++ hdf5-1.8.4/test/dsets.c	2009-12-03 13:13:42.239327244 +0100
-@@ -7402,10 +7402,14 @@
-         nerrors += (test_nbit_compound_3(file) < 0 		? 1 : 0);
-         nerrors += (test_scaleoffset_int(file) < 0 		? 1 : 0);
-         nerrors += (test_scaleoffset_int_2(file) < 0 	? 1 : 0);
-+	/* These tests fail even if dsets is compiled with -O0, 
-+	 * which is recommended solution by HDFGROUP.
-+	 * Problem exists at least since version 1.4.x and occurs
-+	 * on different compilers and architectures.
-         nerrors += (test_scaleoffset_float(file) < 0 	? 1 : 0);
-         nerrors += (test_scaleoffset_float_2(file) < 0 	? 1 : 0);
-         nerrors += (test_scaleoffset_double(file) < 0 	? 1 : 0);
--        nerrors += (test_scaleoffset_double_2(file) < 0 	? 1 : 0);
-+        nerrors += (test_scaleoffset_double_2(file) < 0 	? 1 : 0); */
-         nerrors += (test_multiopen (file) < 0		? 1 : 0);
-         nerrors += (test_types(file) < 0       		? 1 : 0);
-         nerrors += (test_userblock_offset(envval, my_fapl) < 0     	? 1 : 0);
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-sigbus.patch b/sci-libs/hdf5/files/hdf5-1.8.4-sigbus.patch
deleted file mode 100644
index 8efa69b..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.4-sigbus.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-Index: hdf5-1.8.4/src/H5detect.c
-===================================================================
---- hdf5-1.8.4.orig/src/H5detect.c	2010-01-29 12:21:36.000000000 +0100
-+++ hdf5-1.8.4/src/H5detect.c	2010-01-29 12:21:52.000000000 +0100
-@@ -470,6 +470,12 @@
- static void
- sigsegv_handler(int UNUSED signo)
- {
-+    sigset_t set;
-+
-+    sigemptyset(&set);
-+    sigaddset(&set,SIGSEGV);
-+    sigprocmask(SIG_UNBLOCK,&set,NULL);
-+    
-     signal(SIGSEGV, sigsegv_handler);
-     longjmp(jbuf_g, 1);
- }
-@@ -495,6 +501,12 @@
- static void
- sigbus_handler(int UNUSED signo)
- {
-+    sigset_t set;
-+
-+    sigemptyset(&set);
-+    sigaddset(&set,SIGBUS);
-+    sigprocmask(SIG_UNBLOCK,&set,NULL);
-+    
-     signal(SIGBUS, sigbus_handler);
-     longjmp(jbuf_g, 1);
- #ifdef H5_HAVE_SIGLONGJMP
-\ No newline at end of file
diff --git a/sci-libs/hdf5/files/hdf5-1.8.5-implicits.patch b/sci-libs/hdf5/files/hdf5-1.8.5-implicits.patch
deleted file mode 100644
index 89a9998..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.5-implicits.patch
+++ /dev/null
@@ -1,65 +0,0 @@
-Fix implicit function declarations
-
---- hdf5-1.8.5-patch1/tools/misc/talign.c
-+++ hdf5-1.8.5-patch1/tools/misc/talign.c
-@@ -23,6 +23,7 @@
- 
- #include "hdf5.h"
- #include "H5private.h"
-+#include "h5tools.h"
- 
- const char *fname = "talign.h5";
- const char *setname = "align";
---- hdf5-1.8.5-patch1/tools/lib/h5tools_utils.c
-+++ hdf5-1.8.5-patch1/tools/lib/h5tools_utils.c
-@@ -31,6 +31,7 @@
- #include "h5tools_utils.h"
- #include "H5private.h"
- #include "h5trav.h"
-+#include "h5diff.h"
- 
- /* global variables */
- int   nCols = 80;
---- hdf5-1.8.5-patch1/src/H5E.c
-+++ hdf5-1.8.5-patch1/src/H5E.c
-@@ -54,6 +54,8 @@
- /***********/
- /* Headers */
- /***********/
-+#define _GNU_SOURCE
-+#include <stdio.h>
- #include "H5private.h"		/* Generic Functions			*/
- #include "H5Iprivate.h"		/* IDs                                  */
- #include "H5Epkg.h"		/* Error handling		  	*/
---- hdf5-1.8.5-patch1/src/H5Eint.c
-+++ hdf5-1.8.5-patch1/src/H5Eint.c
-@@ -37,6 +37,8 @@
- /***********/
- /* Headers */
- /***********/
-+#define _GNU_SOURCE
-+#include <stdio.h>
- #include "H5private.h"		/* Generic Functions			*/
- #include "H5Epkg.h"		/* Error handling		  	*/
- #include "H5Iprivate.h"		/* IDs                                  */
---- hdf5-1.8.5-patch1/tools/h5copy/h5copygentest.c
-+++ hdf5-1.8.5-patch1/tools/h5copy/h5copygentest.c
-@@ -20,6 +20,7 @@
- #include "hdf5.h"
- #include "H5private.h"
- #include "h5tools.h"
-+#include "h5tools_utils.h"
- 
- /* Name of tool */
- #define PROGRAMNAME "h5copygentest"
---- hdf5-1.8.5-patch1/tools/h5repack/testh5repack_detect_szip.c
-+++ hdf5-1.8.5-patch1/tools/h5repack/testh5repack_detect_szip.c
-@@ -17,7 +17,7 @@
- #include "h5repack.h"
- #include "h5tools.h"
- #include "h5test.h"
--
-+#include "h5tools_utils.h"
- 
- /* Name of tool */
- #define PROGRAMNAME "h5repack_detect_szip"
diff --git a/sci-libs/hdf5/files/hdf5-1.8.5-noreturn.patch b/sci-libs/hdf5/files/hdf5-1.8.5-noreturn.patch
deleted file mode 100644
index 40065f7..0000000
--- a/sci-libs/hdf5/files/hdf5-1.8.5-noreturn.patch
+++ /dev/null
@@ -1,73 +0,0 @@
---- hl/src/H5LTanalyze.c
-+++ hl/src/H5LTanalyze.c
-@@ -2329,7 +2329,7 @@
-    return ret;
- }
- 
--int H5LTyyerror(char *msg)
-+void H5LTyyerror(char *msg)
- {
-    printf("ERROR: %s before \"%s\".\n", msg, yytext);
- }
---- hl/src/H5LTanalyze.l
-+++ hl/src/H5LTanalyze.l
-@@ -181,7 +181,7 @@
-    return ret;
- }
- 
--int H5LTyyerror(char *msg)
-+void H5LTyyerror(char *msg)
- {
-    printf("ERROR: %s before \"%s\".\n", msg, yytext);
- }
---- hl/src/H5LTparse.c
-+++ hl/src/H5LTparse.c
-@@ -64,7 +64,7 @@
- #include<hdf5.h>
- 
- extern int yylex();
--extern int yyerror(char *);
-+extern void yyerror(char *);
- 
- #define STACK_SIZE      16
- 
---- test/dt_arith.c
-+++ test/dt_arith.c
-@@ -3408,6 +3408,7 @@
-     else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL)
-         return 1;
- #endif
-+    return 1;
- }
- 
- 
---- tools/h5dump/h5dump.c
-+++ tools/h5dump/h5dump.c
-@@ -602,6 +602,7 @@
-  *
-  *-------------------------------------------------------------------------
-  */
-+static void leave(int ret) __attribute__ ((__noreturn__));
- static void
- leave(int ret)
- {
---- tools/h5ls/h5ls.c
-+++ tools/h5ls/h5ls.c
-@@ -2147,6 +2147,7 @@
-  *
-  *-------------------------------------------------------------------------
-  */
-+static void leave(int ret) __attribute__ ((__noreturn__));
- static void
- leave(int ret)
- {
---- tools/h5stat/h5stat.c
-+++ tools/h5stat/h5stat.c
-@@ -181,6 +181,7 @@
-     { NULL, 0, '\0' }
- };
- 
-+static void leave(int ret) __attribute__ ((__noreturn__));
- static void
- leave(int ret)
- {
diff --git a/sci-libs/hdf5/files/mpd.conf b/sci-libs/hdf5/files/mpd.conf
deleted file mode 100644
index 07dd982..0000000
--- a/sci-libs/hdf5/files/mpd.conf
+++ /dev/null
@@ -1,2 +0,0 @@
-secretword=test69hike
-MPD_SECRETWORD=test69hike
diff --git a/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild b/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild
deleted file mode 100644
index b6b1b9f..0000000
--- a/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild
+++ /dev/null
@@ -1,113 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild,v 1.18 2011/07/06 15:00:48 xarthisius Exp $
-
-EAPI=3
-
-inherit autotools eutils fortran-2
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://www.hdfgroup.org/HDF5/"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/prev-releases/${P}/src/${P}.tar.gz"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="alpha amd64 ia64 ppc ppc64 sparc x86"
-IUSE="cxx examples fortran mpi szip threads zlib"
-
-RDEPEND="
-	fortran? ( virtual/fortran )
-	mpi? ( || (
-			sys-cluster/openmpi[romio]
-			sys-cluster/mpich2[romio] ) )
-	szip? ( >=sci-libs/szip-2.1 )
-	zlib? ( sys-libs/zlib )"
-
-DEPEND="${RDEPEND}
-	sys-devel/libtool:2
-	sys-process/time"
-
-pkg_setup() {
-	use fortran && fortran-2_pkg_setup
-	if use mpi; then
-		if has_version 'sci-libs/hdf5[-mpi]'; then
-			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
-			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
-		fi
-		if use cxx; then
-			ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
-			ewarn "Will disable cxx interface"
-		fi
-		export CC=mpicc
-		if use fortran; then
-			export FC=mpif90
-		fi
-	elif has_version 'sci-libs/hdf5[mpi]'; then
-		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
-		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
-	fi
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-1.8.3-as-needed.patch \
-		"${FILESDIR}"/${PN}-1.8.3-includes.patch \
-		"${FILESDIR}"/${PN}-1.8.3-noreturn.patch \
-		"${FILESDIR}"/${P}-gnutools.patch \
-		"${FILESDIR}"/${P}-scaleoffset.patch \
-		"${FILESDIR}"/${P}-sigbus.patch
-
-	# respect gentoo examples directory
-	sed \
-		-e 's:$(docdir)/hdf5:$(DESTDIR)/$(docdir):' \
-		-i $(find . -name Makefile.am) || die
-	sed \
-		-e '/docdir/d' \
-		-i config/commence.am || die
-	eautoreconf
-	# enable shared libs by default for h5cc config utility
-	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
-		|| die "sed h5cc.in failed"
-}
-
-src_configure() {
-	# threadsafe incompatible with many options
-	local myconf="--disable-threadsafe"
-	use threads && ! use fortran && ! use cxx && ! use mpi \
-		&& myconf="--enable-threadsafe"
-
-	if use mpi; then
-		myconf="${myconf} --disable-cxx"
-	else
-	# workaround for bug 285148
-		if use cxx; then
-			myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
-		fi
-		if use fortran; then
-			myconf="${myconf} FC=$(tc-getFC)"
-		fi
-	fi
-
-	econf \
-		--disable-sharedlib-rpath \
-		--enable-production \
-		--enable-strict-format-checks \
-		--docdir=/usr/share/doc/${PF} \
-		--enable-deprecated-symbols \
-		--enable-shared \
-		$(use_enable fortran) \
-		$(use_enable mpi parallel) \
-		$(use_with szip szlib) \
-		$(use_with threads pthread) \
-		$(use_with zlib) \
-		${myconf}
-}
-
-src_install() {
-	emake DESTDIR="${D}" install || die "emake install failed"
-	dodoc README.txt
-	if use examples; then
-		emake DESTDIR="${D}" install-examples \
-			|| die "emake install examples failed"
-	fi
-}
diff --git a/sci-libs/hdf5/hdf5-1.8.6.ebuild b/sci-libs/hdf5/hdf5-1.8.6.ebuild
deleted file mode 100644
index 9851225..0000000
--- a/sci-libs/hdf5/hdf5-1.8.6.ebuild
+++ /dev/null
@@ -1,110 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.6.ebuild,v 1.7 2011/07/06 15:00:48 xarthisius Exp $
-
-EAPI=3
-
-inherit autotools eutils fortran-2
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://www.hdfgroup.org/HDF5/"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86"
-IUSE="cxx debug examples fortran mpi szip threads zlib"
-
-RDEPEND="
-	fortran? ( virtual/fortran )
-	mpi? ( virtual/mpi[romio] )
-	szip? ( >=sci-libs/szip-2.1 )
-	zlib? ( sys-libs/zlib )"
-
-DEPEND="${RDEPEND}
-	sys-devel/libtool:2
-	sys-process/time"
-
-pkg_setup() {
-	use fortran && fortran-2_pkg_setup
-	if use mpi; then
-		if has_version 'sci-libs/hdf5[-mpi]'; then
-			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
-			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
-		fi
-		if use cxx; then
-			ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
-			ewarn "Will disable cxx interface"
-		fi
-		export CC=mpicc
-		if use fortran; then
-			export FC=mpif90
-		fi
-	elif has_version 'sci-libs/hdf5[mpi]'; then
-		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
-		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
-	fi
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-1.8.3-as-needed.patch \
-		"${FILESDIR}"/${PN}-1.8.5-implicits.patch \
-		"${FILESDIR}"/${PN}-1.8.5-noreturn.patch \
-		"${FILESDIR}"/${PN}-1.8.4-scaleoffset.patch \
-
-	# respect gentoo examples directory
-	sed \
-		-e "s:hdf5_examples:doc/${PF}/examples:g" \
-		-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
-	sed \
-		-e '/docdir/d' \
-		-i config/commence.am || die
-	eautoreconf
-	# enable shared libs by default for h5cc config utility
-	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
-		|| die "sed h5cc.in failed"
-}
-
-src_configure() {
-	# threadsafe incompatible with many options
-	local myconf="--disable-threadsafe"
-	use debug && myconf="${myconf} --enable-codestack"
-	use threads && ! use fortran && ! use cxx && ! use mpi \
-		&& myconf="--enable-threadsafe"
-
-	if use mpi; then
-		myconf="${myconf} --disable-cxx"
-	else
-	# workaround for bug 285148
-		if use cxx; then
-			myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
-		fi
-		if use fortran; then
-			myconf="${myconf} FC=$(tc-getFC)"
-		fi
-	fi
-
-	econf \
-		--disable-sharedlib-rpath \
-		--enable-production \
-		--docdir=/usr/share/doc/${PF} \
-		--enable-deprecated-symbols \
-		--enable-shared \
-		$(use_enable debug debug all) \
-		$(use_enable fortran) \
-		$(use_enable mpi parallel) \
-		$(use_with szip szlib) \
-		$(use_with threads pthread) \
-		$(use_with zlib) \
-		${myconf}
-}
-
-src_install() {
-	emake DESTDIR="${D}" install || die "emake install failed"
-	dodoc README.txt
-	if use examples; then
-		emake DESTDIR="${D}" install-examples \
-			|| die "emake install examples failed"
-	fi
-}
diff --git a/sci-libs/hdf5/hdf5-1.8.7.ebuild b/sci-libs/hdf5/hdf5-1.8.7.ebuild
deleted file mode 100644
index ec759a6..0000000
--- a/sci-libs/hdf5/hdf5-1.8.7.ebuild
+++ /dev/null
@@ -1,107 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.7.ebuild,v 1.8 2011/07/08 11:24:29 xarthisius Exp $
-
-EAPI=4
-
-inherit autotools eutils fortran-2
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://www.hdfgroup.org/HDF5/"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
-IUSE="cxx debug examples fortran mpi szip threads zlib"
-
-RDEPEND="
-	fortran? ( virtual/fortran )
-	mpi? ( virtual/mpi[romio] )
-	szip? ( >=sci-libs/szip-2.1 )
-	zlib? ( sys-libs/zlib )"
-
-DEPEND="${RDEPEND}
-	sys-devel/libtool:2
-	sys-process/time"
-
-pkg_setup() {
-	use fortran && fortran-2_pkg_setup
-	if use mpi; then
-		if has_version 'sci-libs/hdf5[-mpi]'; then
-			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
-			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
-		fi
-		if use cxx; then
-			ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
-			ewarn "Will disable cxx interface"
-		fi
-		export CC=mpicc
-		use fortran && export FC=mpif90
-	elif has_version 'sci-libs/hdf5[mpi]'; then
-		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
-		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
-	fi
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-1.8.3-as-needed.patch \
-		"${FILESDIR}"/${PN}-1.8.5-implicits.patch \
-		"${FILESDIR}"/${PN}-1.8.5-noreturn.patch \
-		"${FILESDIR}"/${PN}-1.8.4-scaleoffset.patch \
-
-	# respect gentoo examples directory
-	sed \
-		-e "s:hdf5_examples:doc/${PF}/examples:g" \
-		-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
-	sed \
-		-e '/docdir/d' \
-		-i config/commence.am || die
-	eautoreconf
-	# enable shared libs by default for h5cc config utility
-	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
-		|| die "sed h5cc.in failed"
-}
-
-src_configure() {
-	# threadsafe incompatible with many options
-	local myconf="--disable-threadsafe"
-	use debug && myconf="${myconf} --enable-codestack"
-	use threads && ! use fortran && ! use cxx && ! use mpi \
-		&& myconf="--enable-threadsafe"
-
-	if use mpi; then
-		myconf="${myconf} --disable-cxx"
-	else
-	# workaround for bug 285148
-		if use cxx; then
-			myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
-		fi
-		if use fortran; then
-			myconf="${myconf} FC=$(tc-getFC)"
-		fi
-	fi
-
-	econf \
-		--disable-sharedlib-rpath \
-		--enable-production \
-		--docdir=/usr/share/doc/${PF} \
-		--enable-deprecated-symbols \
-		--enable-shared \
-		--disable-silent-rules \
-		$(use_enable debug debug all) \
-		$(use_enable fortran) \
-		$(use_enable mpi parallel) \
-		$(use_with szip szlib) \
-		$(use_with threads pthread) \
-		$(use_with zlib) \
-		${myconf}
-}
-
-src_install() {
-	default
-	if use examples; then
-		emake DESTDIR="${D}" install-examples
-	fi
-}
diff --git a/sci-libs/hdf5/metadata.xml b/sci-libs/hdf5/metadata.xml
deleted file mode 100644
index 2058812..0000000
--- a/sci-libs/hdf5/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci</herd>
-	<longdescription>
-  HDF5 is a file format and library for storing scientific data. HDF5
-  was designed and implemented to address the deficiencies of HDF4.x. It
-  has a more powerful and flexible data model, supports files larger
-  than 2 GB, and supports parallel I/O.
-</longdescription>
-</pkgmetadata>