diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bwa/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/bwa/Manifest | 30 | ||||
| -rw-r--r-- | sci-biology/bwa/bwa-0.6.2.ebuild | 35 |
3 files changed, 53 insertions, 21 deletions
diff --git a/sci-biology/bwa/ChangeLog b/sci-biology/bwa/ChangeLog index fe95fdbb5394..a227c899b47d 100644 --- a/sci-biology/bwa/ChangeLog +++ b/sci-biology/bwa/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bwa -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.11 2011/11/30 08:44:21 weaver Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.12 2013/01/21 06:15:22 weaver Exp $ + +*bwa-0.6.2 (21 Jan 2013) + + 21 Jan 2013; Andrey Kislyuk <weaver@gentoo.org> +bwa-0.6.2.ebuild: + Version bump *bwa-0.6.1 (30 Nov 2011) diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest index e040ac6ec458..a65c0a25037f 100644 --- a/sci-biology/bwa/Manifest +++ b/sci-biology/bwa/Manifest @@ -1,19 +1,11 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - -DIST bwa-0.5.0.tar.bz2 103638 RMD160 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e50da2f26fd4c908446d22da3edb595d60e61d72def374be46440358802a211fc34045b7ad970c4f94b57f7b17ff24cfe64dc94254fea20e047f1fbbbcae0c64 diff --git a/sci-biology/bwa/bwa-0.6.2.ebuild b/sci-biology/bwa/bwa-0.6.2.ebuild new file mode 100644 index 000000000000..9430a23b2e0d --- /dev/null +++ b/sci-biology/bwa/bwa-0.6.2.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.6.2.ebuild,v 1.1 2013/01/21 06:15:22 weaver Exp $ + +EAPI=2 + +inherit flag-o-matic toolchain-funcs + +DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" +HOMEPAGE="http://bio-bwa.sourceforge.net/" +SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2" + +LICENSE="GPL-3" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86 ~x64-macos" + +src_prepare() { + sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \ + -i "${S}"/Makefile || die #336348 + append-flags -pthread +} + +src_compile() { + emake -e CC="$(tc-getCC)" || die +} + +src_install() { + dobin bwa || die + doman bwa.1 || die + exeinto /usr/share/${PN} + doexe solid2fastq.pl || die + doexe qualfa2fq.pl || die + dodoc ChangeLog NEWS || die +} |