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# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
inherit toolchain-funcs
DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular structures"
HOMEPAGE="http://www.theseus3d.org/"
RESTRICT="fetch"
ORIG_URI="${PN}.tar.gz"
SRC_URI="${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~ppc ~x86"
IUSE=""
RDEPEND="virtual/lapack
virtual/blas
sci-biology/muscle"
DEPEND="${RDEPEND}"
S="${WORKDIR}/${PN}"
pkg_nofetch() {
elog "Download ${ORIG_URI} from ${HOMEPAGE}"
elog "Rename it to ${SRC_URI} and place it in ${DISTDIR}."
}
src_unpack() {
unpack ${A}
sed -i \
-e "s:^\(SYSLIBS\).*:\1 = -lm -lc:g" \
-e "s:^\(BLASLIB\).*:\1 = -lblas:g" \
-e "s:^\(LAPACKLIB\).*:\1 = -llapack:g" \
-e "s:^\(INSTALLDIR\).*:\1 = \"${D}usr/bin\":g" \
-e "s:^\(OPT\).*:\1 = ${CFLAGS}:g" \
-e "s:^\(WARN\).*:\1 = :g" \
-e "s:^\(CFLAGS\).*:\1 = \$(WARN) -std=c99 -pthread:g" \
-e "s:^\(CC\).*:\1 = $(tc-getCC):g" \
"${S}"/make.inc
sed -i \
-e "s:/local::g" \
-e "s:clustlaw:clustalw:g" \
"${S}"/theseus_align
}
src_compile() {
emake || die "emake failed"
}
src_install() {
dodir /usr/bin
emake install || die "emake install failed"
doman theseus.1
# the README is just a copy of the formatted man page, don't install it
dodoc AUTHORS
docinto examples; dodoc examples/*
}
pkg_postinst() {
elog "You may use theseus_align to create a sequence alignment, then superpose"
elog "the aligned sequences. It is not a structure-based alignment."
elog "By default, it uses MUSCLE. You may edit the script to change this."
}
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