summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorDavid Seifert <soap@gentoo.org>2020-04-22 11:29:40 +0200
committerDavid Seifert <soap@gentoo.org>2020-04-22 11:29:40 +0200
commitb2e205cd00f9cf8b4e13e159750a68f964b4862a (patch)
tree446e6f3e3e1bd7faf9dc65ccbfe98d73233c1a3b /sci-biology
parentnet-misc/megatools: bump to 1.10.3 (diff)
downloadgentoo-b2e205cd00f9cf8b4e13e159750a68f964b4862a.tar.gz
gentoo-b2e205cd00f9cf8b4e13e159750a68f964b4862a.tar.bz2
gentoo-b2e205cd00f9cf8b4e13e159750a68f964b4862a.zip
sci-biology/mafft: Fix -fno-common / GCC 10
Closes: https://bugs.gentoo.org/707738 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/mafft/files/mafft-7.305-fno-common.patch8
-rw-r--r--sci-biology/mafft/mafft-7.305.ebuild3
2 files changed, 10 insertions, 1 deletions
diff --git a/sci-biology/mafft/files/mafft-7.305-fno-common.patch b/sci-biology/mafft/files/mafft-7.305-fno-common.patch
new file mode 100644
index 000000000000..0287b6367f8b
--- /dev/null
+++ b/sci-biology/mafft/files/mafft-7.305-fno-common.patch
@@ -0,0 +1,8 @@
+--- a/core/mltaln.h
++++ b/core/mltaln.h
+@@ -336,4 +336,4 @@
+
+ extern double sueff_global;
+ extern double lenfaca, lenfacb, lenfacc, lenfacd;
+-int maxl, tsize;
++extern int maxl, tsize;
diff --git a/sci-biology/mafft/mafft-7.305.ebuild b/sci-biology/mafft/mafft-7.305.ebuild
index 9f9f631416b2..f4863892571a 100644
--- a/sci-biology/mafft/mafft-7.305.ebuild
+++ b/sci-biology/mafft/mafft-7.305.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -17,6 +17,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
IUSE="threads"
S="${WORKDIR}/${P}${EXTENSIONS}"
+PATCHES=( "${FILESDIR}"/${PN}-7.305-fno-common.patch )
src_prepare() {
default