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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-03-23 07:20:14 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-03-23 07:20:14 +0000 |
| commit | 36c232384bd113ea58673b06ac69fd4a29a75a73 (patch) | |
| tree | f6f1623bf6fc7a998150093b256bdccfe5fee6db /sci-biology/bowtie/bowtie-0.12.3.ebuild | |
| parent | Version bump. Better compatibility with Rails 3. (diff) | |
| download | historical-36c232384bd113ea58673b06ac69fd4a29a75a73.tar.gz historical-36c232384bd113ea58673b06ac69fd4a29a75a73.tar.bz2 historical-36c232384bd113ea58673b06ac69fd4a29a75a73.zip | |
Version bump, drop old versions
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/bowtie/bowtie-0.12.3.ebuild')
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.12.3.ebuild | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/sci-biology/bowtie/bowtie-0.12.3.ebuild b/sci-biology/bowtie/bowtie-0.12.3.ebuild new file mode 100644 index 000000000000..73f28a9f46fe --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.12.3.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.3.ebuild,v 1.1 2010/03/23 07:20:14 weaver Exp $ + +EAPI="2" + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS + +src_prepare() { + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + exeinto /usr/share/${PN}/scripts + doexe scripts/* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |