Fixed compilation problem on ppc64 (see bug #119723)

Package-Manager: portage-2.0.53

4 files changed, 61 insertions, 2 deletions

diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index e5cba4b9c7c0..9c6b451e2327 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/hmmer
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.9 2006/01/04 23:36:18 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.10 2006/01/21 16:48:49 ribosome Exp $
+
+*hmmer-2.3.2-r2 (21 Jan 2006)
+
+  21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> +hmmer-2.3.2-r2.ebuild:
+  Fixed compilation problem on ppc64 (see bug #119723).
 
   04 Jan 2006; Olivier Fisette <ribosome@gentoo.org> hmmer-2.3.2-r1.ebuild:
   Do not depend on "virtual/libc" (package not in system target).
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index 1b2383b095b2..32c6e7ecd9d8 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -1,7 +1,9 @@
-MD5 f0c9c5e880617ab3c0622dbe5f75fe14 ChangeLog 2077
+MD5 66411da8ac5d4b4a67cd822cb87c2ec1 ChangeLog 2243
 MD5 9fbc129db1a886510ff026fd89e131f1 files/Makefile-hmmer-2.2g.patch 1040
 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2 64
 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r1 64
+MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r2 64
 MD5 d78dff41cf02e7b792484417d3e8ad34 hmmer-2.3.2-r1.ebuild 1155
+MD5 31f9875d4df1ce185e256f8b7d302ea8 hmmer-2.3.2-r2.ebuild 1151
 MD5 b6535554daed47342c9e632acc271cfc hmmer-2.3.2.ebuild 924
 MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
diff --git a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2 b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2
new file mode 100644
index 000000000000..a923f14534a4
--- /dev/null
+++ b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2
@@ -0,0 +1 @@
+MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933
diff --git a/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild
new file mode 100644
index 000000000000..81b9ffc486a3
--- /dev/null
+++ b/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild,v 1.1 2006/01/21 16:48:49 ribosome Exp $
+
+DESCRIPTION="Sequence analysis using profile hidden Markov models"
+LICENSE="GPL-2"
+HOMEPAGE="http://hmmer.wustl.edu/"
+SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
+
+SLOT="0"
+IUSE="pvm threads"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~sparc ~x86"
+
+DEPEND="pvm? ( sys-cluster/pvm )"
+
+src_compile() {
+	econf \
+		--host=${CHOST} \
+		--prefix=${D}/usr \
+		--exec_prefix=${D}/usr \
+		--mandir=${D}/usr/share/man \
+		--enable-lfs \
+		$(use_enable pvm) \
+		$(use_enable threads) || die
+	emake || die
+}
+
+src_install() {
+	einstall || die
+
+	cd src
+	dolib libhmmer.a
+	insinto /usr/include/hmmer
+	doins *.h
+
+	cd ../squid
+	dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
+	dolib libsquid.a
+	insinto /usr/include/hmmer
+	doins *.h
+
+	cd ..
+	dodoc NOTES
+	newdoc 00README README
+	insinto /usr/share/doc/${PF}
+	doins Userguide.pdf
+}
+
+src_test() {
+	make check
+}