Version bump

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

3 files changed, 23 insertions, 33 deletions

diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index ce311350187d..ec041a29aa2c 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/hmmer
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.27 2010/01/01 21:52:57 fauli Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.28 2010/03/28 20:51:02 weaver Exp $
+
+*hmmer-3.0 (28 Mar 2010)
+
+  28 Mar 2010; Andrey Kislyuk <weaver@gentoo.org> -hmmer-3.0_beta2.ebuild,
+  +hmmer-3.0.ebuild:
+  Version bump
 
   01 Jan 2010; Christian Faulhammer <fauli@gentoo.org>
   hmmer-3.0_beta2.ebuild:
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index 0509e4d86ed3..eadb460e209b 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -1,17 +1,7 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST hmmer-2.3.2.tar.gz 1024933 RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 SHA1 aa34cb97cbc43ff3bd92dd111ba5677298fe2d40 SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4
-DIST hmmer-3.0b2.tar.gz 26577112 RMD160 693705a0f2ffb507c037a23a44cfa7c95289978c SHA1 8466c180a9678c5ead58cf66d8d52879218e77ef SHA256 7b0b5cbe4ae05b0e1f671d59d749740d70191ab6119ab3f55216398244630eaa
+DIST hmmer-3.0.tar.gz 3952015 RMD160 681967fd0d2c0104ca9e080688d9652a187a8b45 SHA1 77803c0bdb3ab07b7051a4c68c0564de31940c6d SHA256 6977e6473fcb554b1d5a86dc9edffffa53918c1bd88d7fd20d7499f1ba719e83
 EBUILD hmmer-2.3.2-r1.ebuild 1158 RMD160 b7e130b6b8ea46f1c2b8ecc4073820ef5ee429e9 SHA1 9da503dfe5df93dabe896d4911e0a180c824dba9 SHA256 7b1c363372b53e63da3ee7edb04bec7b8dee6606bf936205b32aaca780215bac
 EBUILD hmmer-2.3.2-r2.ebuild 1158 RMD160 12e1bc9bbef0d97b86bf4cabf40803ca28add539 SHA1 fdb710ae9b4f534342bc9798ba6334434e29bb7f SHA256 e637aada0386e9de663ae00dbe0af1a60c68d197c096d2f8a8b9991556e548da
-EBUILD hmmer-3.0_beta2.ebuild 1062 RMD160 b2d9392e75b301858dfbdf14646fe873f6f28092 SHA1 6b0abf204a01bc90035638daea8fd528945be03d SHA256 917503f0341db9d7644a3dbb33827e1e003decc561638d5bfd1fc02b1255c98b
-MISC ChangeLog 4229 RMD160 5e34b9a2fe872494e74a2dc66c7676948db2925a SHA1 f1d73f0273e55f00c188fe9008792d2a7f65a30d SHA256 c8c383b1fa0cffb15768a3d405f6147e88577525e45060ce819ec6cc2be9c851
+EBUILD hmmer-3.0.ebuild 937 RMD160 466a0c9233f02e936fbb0484a3c74c24d9bab349 SHA1 a178787a57f9a0fbaf8539efdff6d043ab50089e SHA256 9e3ccc4906573682043590e12c4e446a0ade9114b5e6881791c1caab10d76490
+MISC ChangeLog 4368 RMD160 6c361c13d4d6eb8bb92a9e1bcc86c88dcd522a54 SHA1 f4a28905481e8911040c47bbf81300f75e39e573 SHA256 635ad31f97abd5b54c7156ca874ec96a67e7365142a0dd2c6377e3c0ad8dd2e3
 MISC metadata.xml 277 RMD160 a018c1e9848781266ea1b6f0f6637de4f4883ca4 SHA1 62f5832f9fbeed814bae04f46e6a4815ce8e27fa SHA256 1faaa440fc96892d78af96f5450e6931f482410380abcbb5d608138c29799eb4
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-5i4An14AjL6PZCp2pf/TbFv4o4oBgjgW
-=16Ut
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diff --git a/sci-biology/hmmer/hmmer-3.0_beta2.ebuild b/sci-biology/hmmer/hmmer-3.0.ebuild
index 099db57b0a7d..fa358d2c221e 100644
--- a/sci-biology/hmmer/hmmer-3.0_beta2.ebuild
+++ b/sci-biology/hmmer/hmmer-3.0.ebuild
@@ -1,44 +1,38 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild,v 1.2 2010/01/01 21:52:57 fauli Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0.ebuild,v 1.1 2010/03/28 20:51:02 weaver Exp $
 
 EAPI="2"
 
-MY_P="hmmer-3.0b2"
-
 DESCRIPTION="Sequence analysis using profile hidden Markov models"
 HOMEPAGE="http://hmmer.janelia.org/"
-SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz"
+SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${PV}/${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE="sse mpi threads" # gsl
+IUSE="+sse mpi +threads gsl"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 
-# NB: compile failure with mpi, disabling temporarily
-# gsl? ( sci-libs/gsl )
-# mpi? ( virtual/mpi )
-DEPEND=""
+DEPEND="mpi? ( virtual/mpi )
+	gsl? ( >=sci-libs/gsl-1.12 )"
 RDEPEND="${DEPEND}"
 
-S="${WORKDIR}/${MY_P}"
-
 src_configure() {
 	econf $(use_enable sse) \
-		$(use_enable threads) || die
-#		$(use_enable mpi) \
-#		$(use_with gsl) || die
-}
-
-src_compile() {
-	emake -j1 || die
+		$(use_enable mpi) \
+		$(use_enable threads) \
+		$(use_with gsl) || die
 }
 
 src_install() {
-	emake DESTDIR="${D}" install || die
+	einstall || die
 	dolib src/libhmmer.a || die
 	dolib easel/libeasel.a || die
 	insinto /usr/share/${PN}
 	doins -r tutorial || die
 	dodoc RELEASE-NOTES Userguide.pdf
 }
+
+src_test() {
+	emake check || die
+}