diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-07 17:35:31 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-07 17:35:31 +0000 |
| commit | 84d82f047288716436096e6bd35a94a05fffada6 (patch) | |
| tree | 35e7cb4b25c4d7479db391303d83380c2efadaaf /sci-biology/shrimp | |
| parent | Add back .904 since it's the latest stable (diff) | |
| download | historical-84d82f047288716436096e6bd35a94a05fffada6.tar.gz historical-84d82f047288716436096e6bd35a94a05fffada6.tar.bz2 historical-84d82f047288716436096e6bd35a94a05fffada6.zip | |
Import from Science overlay
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/shrimp')
| -rw-r--r-- | sci-biology/shrimp/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/shrimp/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/shrimp/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-1.2.1.ebuild | 36 |
4 files changed, 62 insertions, 0 deletions
diff --git a/sci-biology/shrimp/ChangeLog b/sci-biology/shrimp/ChangeLog new file mode 100644 index 000000000000..8f5fce2efacd --- /dev/null +++ b/sci-biology/shrimp/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/shrimp +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.1 2009/07/07 17:35:31 weaver Exp $ + +*shrimp-1.2.1 (07 Jul 2009) + + 07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +shrimp-1.2.1.ebuild: + Import from Science overlay + + 02 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package sci-biology/shrimp, ebuild written by me + diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest new file mode 100644 index 000000000000..50366a737620 --- /dev/null +++ b/sci-biology/shrimp/Manifest @@ -0,0 +1,4 @@ +DIST SHRiMP_1_2_1.src.tar.gz 102426 RMD160 59c241bfa0570b9dcf9222f6b8991ba1f88ac28a SHA1 6b54b5aa38f4d79cc3fd1fc97cd327f650f0d9ee SHA256 8fe55ca7cda3b90e8daa094fa3b4ee902271779fb5eb6a6d6f31bb4ad9a4db0a +EBUILD shrimp-1.2.1.ebuild 827 RMD160 0b35dd5695086bf27868945fe18ab2c7359d02c3 SHA1 50327d7cd2599fd694aa3680353a1c053e029a82 SHA256 320e9b0d64deca9d47237dc2bd70e5662811f51889b695dc14eaa8c0495ca0c0 +MISC ChangeLog 475 RMD160 25285e3cd0a8e84dcdc687c0b84e44cabeb391cc SHA1 dc7651e25d8fb04f3256aaba6b13a9c5e1010d80 SHA256 c203d0d3f52592b1f14db2743665820894fc230847931fdad96e037d3901db6a +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/shrimp/metadata.xml b/sci-biology/shrimp/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/shrimp/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/shrimp/shrimp-1.2.1.ebuild b/sci-biology/shrimp/shrimp-1.2.1.ebuild new file mode 100644 index 000000000000..a30002ebcadf --- /dev/null +++ b/sci-biology/shrimp/shrimp-1.2.1.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-1.2.1.ebuild,v 1.1 2009/07/07 17:35:31 weaver Exp $ + +EAPI="2" + +inherit versionator + +MY_PV=$(replace_all_version_separators '_') + +DESCRIPTION="SHort Read Mapping Package" +HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" +SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/SHRiMP_${MY_PV}" + +src_configure() { + sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2' \ + -e 's/-static//' "${S}/Makefile" || die +} + +src_install() { + rm bin/README + dobin bin/* || die + insinto /usr/share/${PN} + doins -r utils || die + dodoc HISTORY README TODO +} |