Added patch to respect LDFLAGS (bug #290754).

Package-Manager: portage-2.1.7.3/cvs/Linux x86_64

4 files changed, 57 insertions, 3 deletions

diff --git a/sci-biology/stride/ChangeLog b/sci-biology/stride/ChangeLog
index 773e384a2f1a..512c325cbb32 100644
--- a/sci-biology/stride/ChangeLog
+++ b/sci-biology/stride/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/stride
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/stride/ChangeLog,v 1.6 2007/09/20 14:35:18 coldwind Exp $
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/stride/ChangeLog,v 1.7 2009/11/06 02:44:33 markusle Exp $
+
+*stride-20011129-r1 (06 Nov 2009)
+
+  06 Nov 2009; Markus Dittrich <markusle@gentoo.org>
+  +stride-20011129-r1.ebuild, +files/stride-LDFLAGS.patch:
+  Added patch to respect LDFLAGS (bug #290754). Thanks much to
+  Justin Lecher (jlec) <jlec@j-schmitz.net> for providing it.
 
   20 Sep 2007; Santiago M. Mola <coldwind@gentoo.org>
   stride-20011129.ebuild:
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index 58cab1cd356a..311d75b5ec65 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,5 +1,7 @@
+AUX stride-LDFLAGS.patch 280 RMD160 f4f594bfab2ac2151bbf5d679c8ead73dec11f3f SHA1 f4eb9952b4e54d9ec2610cf7444c31efd23562e1 SHA256 3b2387a0649d76a24d5e9ed611ec3da43ca7844a3ce3704ebbad63699328fd10
 DIST stride-20060723-update.patch.bz2 5621 RMD160 c5ac88dcff4d074adb18fb09cc39f37e6b95d82a SHA1 a57e7780d2dd44ce53e72dac35ed4d8539a83d10 SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81
 DIST stride.tar.gz 56441 RMD160 6fdcf064f37ce44529446a043b56663af9765054 SHA1 f85cca717c79200bf33fa3a80323ccd9da471669 SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9
+EBUILD stride-20011129-r1.ebuild 1034 RMD160 def48dc81a934df630c12f30938629ab29fd1149 SHA1 498125ba20907a608326c20e228dadcd1eb02a64 SHA256 6dae5c969b87a0d7ac519dc5a4d7684a50898821d042cb717270bb1dace41001
 EBUILD stride-20011129.ebuild 1003 RMD160 775392d19dc194b0f8ab07fd0a1cd9ea81374bd5 SHA1 d0587bec117b9b4f2859ca8837fdeef3ea1f1bee SHA256 b8c519c592d6a290e2a2dd516580d45c4028c320c431c3d5c3bfa72f9bac2e76
-MISC ChangeLog 1071 RMD160 d5e709200df9667ad51dc538b6b990ca7ed21919 SHA1 b385a5dcc68636fa354deed50a193511136ac3ab SHA256 8902fd640c18d9099daffb1c796da4e5e9d2c0c099dae06bd50fe368dfbed5c0
+MISC ChangeLog 1344 RMD160 f60357c47c2ffec360dc8ece44d85b4b4f52eeeb SHA1 98b9cbd72096f485f5a9509107a3cd0db3450203 SHA256 33c47355a47b11543bf7a13d98c27b6e29d9a341e75cd99d4b1a23d5ee2ae8f0
 MISC metadata.xml 262 RMD160 346498c47da29f51b223d00c4d2cdf35e69386f6 SHA1 fdf6cc4c581eb3162837bfde3334803445332489 SHA256 732b5b7d88c83d3b0bd0be860f512d9545353e2a2c89b873da8c2217394736c7
diff --git a/sci-biology/stride/files/stride-LDFLAGS.patch b/sci-biology/stride/files/stride-LDFLAGS.patch
new file mode 100644
index 000000000000..1761b12129bd
--- /dev/null
+++ b/sci-biology/stride/files/stride-LDFLAGS.patch
@@ -0,0 +1,11 @@
+--- Makefile	2009-10-27 21:18:45.000000000 +0100
++++ Makefile.new	2009-10-27 21:19:00.000000000 +0100
+@@ -12,7 +12,7 @@
+ 
+ 
+ stride : $(OBJECT)
+-	$(CC) $(OBJECT) $(FLAGS)  $(BINDIR)/stride
++	$(CC) $(LDFLAGS) $(OBJECT) $(FLAGS)  $(BINDIR)/stride
+ 
+ $(OBJECT) : stride.h protot.h
+ 
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
new file mode 100644
index 000000000000..0c989d05c8aa
--- /dev/null
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/stride/stride-20011129-r1.ebuild,v 1.1 2009/11/06 02:44:33 markusle Exp $
+
+EAPI="2"
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="A program for protein secondary structure assignment from atomic coordinates."
+HOMEPAGE="http://www.embl-heidelberg.de/argos/stride/stride_info.html"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz
+	mirror://gentoo/${PN}-20060723-update.patch.bz2"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE=""
+
+S="${WORKDIR}"
+
+src_prepare() {
+	# this patch updates the source to the most recent
+	# version which was kindly provided by the author
+	epatch "${DISTDIR}/${PN}-20060723-update.patch.bz2"
+	epatch "${FILESDIR}"/${PN}-LDFLAGS.patch
+
+	# fix makefile
+	sed -e "/^CC/s:gcc -g:$(tc-getCC) ${CFLAGS}:" -i Makefile || \
+		die "Failed to fix Makefile"
+}
+
+src_install() {
+	dobin ${PN} || die "Failed to install stride binary"
+}