New upstream version.

Package-Manager: portage-2.1.4.4

4 files changed, 75 insertions, 2 deletions

diff --git a/sci-biology/clustalw/ChangeLog b/sci-biology/clustalw/ChangeLog
index 235710ca57fd..3e523e63a965 100644
--- a/sci-biology/clustalw/ChangeLog
+++ b/sci-biology/clustalw/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/clustalw
 # Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.12 2008/08/27 22:51:42 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.13 2008/08/28 21:15:24 ribosome Exp $
+
+*clustalw-2.0.9 (28 Aug 2008)
+
+  28 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +clustalw-2.0.9.ebuild:
+  New upstream major version (complete rewrite, removing keywords). Slotted
+  to cohexist with version 1.x.
 
 *clustalw-1.83-r2 (27 Aug 2008)
 
diff --git a/sci-biology/clustalw/clustalw-2.0.9.ebuild b/sci-biology/clustalw/clustalw-2.0.9.ebuild
new file mode 100644
index 000000000000..73aab38bba2f
--- /dev/null
+++ b/sci-biology/clustalw/clustalw-2.0.9.ebuild
@@ -0,0 +1,16 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-2.0.9.ebuild,v 1.1 2008/08/28 21:15:24 ribosome Exp $
+
+DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
+HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${PV}/${P}-src.tar.gz"
+
+LICENSE="clustalw"
+SLOT="2"
+KEYWORDS="~x86"
+IUSE=""
+
+src_install() {
+	einstall || die "Installation failed."
+}
diff --git a/sci-biology/clustalx/ChangeLog b/sci-biology/clustalx/ChangeLog
index 5d91281533d1..a33f32834a6b 100644
--- a/sci-biology/clustalx/ChangeLog
+++ b/sci-biology/clustalx/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/clustalx
 # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.15 2008/08/27 23:15:53 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.16 2008/08/28 21:18:33 ribosome Exp $
+
+*clustalx-2.0.9 (28 Aug 2008)
+
+  28 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +clustalx-2.0.9.ebuild:
+  New upstream version (complete rewrite based on Qt).
 
   27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
   clustalx-1.83-r2.ebuild:
diff --git a/sci-biology/clustalx/clustalx-2.0.9.ebuild b/sci-biology/clustalx/clustalx-2.0.9.ebuild
new file mode 100644
index 000000000000..58decc180e4d
--- /dev/null
+++ b/sci-biology/clustalx/clustalx-2.0.9.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-2.0.9.ebuild,v 1.1 2008/08/28 21:18:33 ribosome Exp $
+
+EAPI=1
+
+inherit qt4 eutils
+
+DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
+HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${PV}/${P}-src.tar.gz"
+
+LICENSE="clustalw"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+DEPEND="x11-libs/qt:4"
+
+RDEPEND="sci-biology/clustalw:2"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	sed -e "s|colprot.xml|/usr/share/${PN}/colprot.xml|" \
+			-e "s|coldna.xml|/usr/share/${PN}/coldna.xml|" \
+			-e "s|colprint.xml|/usr/share/${PN}/colprint.xml|" \
+			-i ClustalQtParams.h || \
+			die "Failed to patch shared files location."
+	sed -e "s|clustalx.hlp|/usr/share/${PN}/clustalx.hlp|" \
+			-i HelpDisplayWidget.cpp || \
+			die "Failed to patch help file location."
+}
+
+src_compile() {
+	eqmake4
+	emake || die "Compilation failed."
+}
+
+src_install() {
+	dobin clustalx || die "Failed to install program."
+	insinto "/usr/share/${PN}"
+	doins colprot.xml coldna.xml colprint.xml clustalx.hlp || \
+			die "Failed to install shared files."
+	make_desktop_entry ${PN} ClustalX "" "Application;Science"
+}