sci-biology/mira: Drop old

Package-Manager: portage-2.2.8/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 19 insertions, 79 deletions

diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index 98710cefd1c3..3a24d92ccb6e 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.26 2014/01/14 13:52:56 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.27 2014/01/14 14:12:44 jlec Exp $
+
+  14 Jan 2014; Justin Lecher <jlec@gentoo.org> -mira-3.2.1.ebuild:
+  Drop old
 
   14 Jan 2014; Agostino Sarubbo <ago@gentoo.org> mira-3.9.18.ebuild:
   Stable for x86, wrt bug #497218
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index 37c516e7b267..482b01c84cb6 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -1,31 +1,28 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX mira-3.0.0-asneeded.patch 1468 SHA256 17dec784921baccf2c515f7c269209b5cdeb23143b3412e8ad967e74682ee71f SHA512 23f151eb138a216f329b9fefc8b014391915dd5d578b36ac87b4b7f52277313ae8081011b6839882dcb991524ad674ff22bfd7d6d2a91d28f9e5ff19d41e2f3d WHIRLPOOL b3d37aa5b5963cd75a9c9d4d513351c408aa315f40a07acfb8b8c1998f032ad3df50819786e8f31c7c411cd07b08f1609b4e9f78e4305a97eaf23255a3893ec5
 AUX mira-3.2.1-boost-1.50.patch 3672 SHA256 35bebb987d6192889a1cce84fae822e61d607e80cbaadb0ff1703935f8707ead SHA512 5b0cee936ca68ac57c6c8da4b8ab60e582f6ea1b89f5e02eae5562cd299b5f7bffe12454b55088da46d0e04212499aea72f3702619c9854d99792eb27f7b8995 WHIRLPOOL 08636d66e3d1443c392f798d61f7041ffdb727cb96d1a980e6091217577f75c1703cb172f8dc5d511ef2854e531e0af77bc2a8b58126f991010b7fc7e2877718
 AUX mira-3.4.0.2-boost-1.50.patch 1577 SHA256 66edfe52daf8e84844f20d7425b476a8fae95704226493bced687fd1026ec8e6 SHA512 60e8da6d56385114056f16292fb8e6de63498dbd587b12c26724d9007e8f7eea7550f1dac387035768d7fa76fdffcc7c5baac9b0f92b58bec8c269cf3f397cdf WHIRLPOOL 2fe35917e9b7a8f66ef30b19afc495ffba391aef0e64c695d2733959b12119b2b45d6e79390721e794fcb6bc029af71e3c84bf657bf5e485a1ca8295208623ea
-DIST mira-3.2.1.tar.bz2 9626154 SHA256 86a2c00d182573008ef41f7725aec72ea69756ea9f3dc7e798a7d253a47f8bd7 SHA512 56b2bac26d86f1c6a1aef829e168e53d931e6211078966e4ce5464ef26fbce4395c448521bf7d35f74080c00b4efbf6597b2713b276f04683433c32fdcb1199d WHIRLPOOL 85531afa6f7593de938c922e88871104bdd837271448615a23fcd2042b71e1ef9b7900f1906bb64349cad17f4f66f3d958e6aa2148239738e4c45d320a01185f
 DIST mira-3.9.18.tar.bz2 10378027 SHA256 ca8236b570cf8d3eabfc394edea33a3406e9e8b9e0b8aca9a418d20679710747 SHA512 99bfc0200f8220bdd4ddffb608d2e4e2bf9554cda0f7934c5252e22b01fa93b12105e3e55d59c994ef004d71c0396170ff170bd7494250c961e150123349b914 WHIRLPOOL 90e6016e62b28d5ac681a7da4ae81363da74137002dc6c19e23c8b53a777cd020d727ac2dfd67f126728317ece7b51ea4dab153a720e37b6ac31aa07d5b633b9
 DIST mira_3rdparty_06-07-2012.tar.bz2 31656 SHA256 53cbbb9d57e2fa51706b3f1d055621c0863091542b8851f3ce8a45850951d7d2 SHA512 4d4dbdf7ab5126f9d47160bee8bc127b6a225de8087f6b9914c754324a74d966333207c86a3f38cf0ea9f91408707e2a24086dbe1318fdfa2870b0c39bc5033b WHIRLPOOL c9946ddc032d6864a33e7a60a4d1a515262ca2204535c7d81dcc73144b4f471f766007082d1912fc4ca219a9cbb4ac5a485451c625a7ffcc1949fb8574a3f3d2
-DIST mira_3rdparty_17-04-2010.tar.bz2 31296 SHA256 ec2c77508d75b7c28d3d26137ab69648b1ed653af93d486245ad0e4624e332b2 SHA512 7ed99c24b9f01066398e163320d26e5d7028c9cb5e80ba69e733211863a693391e9b203eb9202afaf8f576bff539a80b476a2230ad0e76b6c0b14dfaf668cb27 WHIRLPOOL 34751ad928aa15f58f7806eddaeb5b245c786d6145369167e9f3644450249b8e2b67c37e9014c9eedd64682409faaa77f215cad9fef5c4de69f3352c5bc33d21
-EBUILD mira-3.2.1.ebuild 1705 SHA256 521674f0c1c9868429ae91d607eff22905844db8b4f597bdf661be7cc7da8f40 SHA512 3ba2cfaf2beeb32aa55720cfa244c90545bb87f3738d8582965092cb6d9d7a8136c9feada4b29031bdbdd42a80cfb351e3ffa60656dbf94c9f0751d08e13667e WHIRLPOOL ca6df69081350f99f7ca99de8023b4542e988c4dcd04f4367b678e7896bfaeb7eb46aa0f2c4771cbc9b5ddb10ccdff417ca2243194ed5dcff2ecb210153a66fe
 EBUILD mira-3.9.18.ebuild 1952 SHA256 7a80d4debebbe7c9f5f7283fff04e9528a78c8b50c4fe7d4d5aed75b337d7b1a SHA512 f9efbb14b4172bb7b1cabceaff13e2154912268b5b5f0554ef49b8159df13a9852cadc4fc032ea50cad7b14dbfcd6d7e89749120b1fb1a780e84b3cd1a422505 WHIRLPOOL 8ce762e645f0d51f356aa5abf1bc28ad387385707709f9a5e07952bc2d584f8d27b971fb94711621e9dac418df867dabd392ee0eccfc72b6baa976e20ae5207a
-MISC ChangeLog 3684 SHA256 6cdffb76ff052e528b051a667580fc474a5d1314185067bfe378eafd19a25067 SHA512 5a76a90ad2097893f790d98e286adde3df2903a0a0b065d1d9a2684f515c192400eafb6b2bb07acada6c49ca584a54e16bf0f9451b853d7d6f481e14281e0f0c WHIRLPOOL 9a9c5ebdfef8022ade2eba9aecb0d742781f29822ec972b2753f5083bd70e5699e112d17670b15ef73d40fcba6679e1377aedeeb136df5dd38e6fcde6634a665
+MISC ChangeLog 3764 SHA256 d20baea9596852eebd90f27be1e8fd0921867465b639582f8776fa019372f4e3 SHA512 b319b98769c27f427fb1e3f446e5bf50bc373c30adb355d957f9b08cc652ac56ba8282ceb9f7b6d13dc3c01b39dca0952432c8474df27c66eb0fe5263156a92f WHIRLPOOL 81ef8b590240b44f9fbb7d73b89017564db2398097a2b8c1203002c0029e5d72779858da6176429aa725798ce56698764b1dc9cef5a9316f02971caefd6177c8
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.22 (GNU/Linux)
 
-iQIcBAEBCAAGBQJS1UE5AAoJELp701BxlEWf40cP/1pazIoOc7MUKZHt5lHl9TlT
-o1slkpHxLfdwK6f6Ek+d7n59IUpMiVXDz7u0UmJ0OTaI8YzT9+6cpL6/jJjcgEeR
-dake5K9nbtcz3TEu3K67X3Riw0A8ZRFgDjR3O2YDYGwpvFpZAg5WIrReRPSqhcX9
-B9xvb7Gu7lTR0R75VaTLTwZlim3gDp7bOOwREYCmxy120N84yRJmlS001l3BIhmW
-TTaqKp6QXWhwRK6LR5Kq2NcqbLSLOXEpMFH6EuERRF2UTYewOy8T8guPCwqfF6Hh
-RH1Ya/a9E96lFpHVNEHWd0ePyTEzNS02+Qur553xOtlKXYuZfOxJaqsn/YkblBn5
-S1ZSANOjfj4vW006kwGHcgUN2GDrHbiYucKmgtgo+QfDUq5BAVMaMM8N+7Fidmah
-TcpxCnRANC64mNTSeL/g9J8uoMnlfOmQMnB6EFspHxBxr9od/wC8XSW5F/VJ2Cxm
-IfiHW/g1iQGfj7GVe2cYHTxM1Xv4dLXN5+YByqmpPeMeDpW6mIemXd8HOzLNrVI1
-nBqZOqqN8+4PTJM6WSCnQJOsyGrqim3DPLaqefq0Zp112z5t2GfOSsSoUH1YXfQi
-gLu9Ri2EEkQd/v9Bff1qUGdg7T41ea1qF050Ytbf/efUhWvbatkzlP/xPe3q8tPj
-sB/AlBBhd8Z01EZaDpQW
-=MCBK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+=RxPb
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/mira/mira-3.2.1.ebuild b/sci-biology/mira/mira-3.2.1.ebuild
deleted file mode 100644
index 18c11397fe2f..000000000000
--- a/sci-biology/mira/mira-3.2.1.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.1.ebuild,v 1.8 2014/01/06 15:30:02 jlec Exp $
-
-EAPI="3"
-
-MIRA_3RDPARTY_PV="17-04-2010"
-
-inherit autotools eutils multilib
-
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
-HOMEPAGE="http://www.chevreux.org/projects_mira.html"
-SRC_URI="
-	mirror://sourceforge/mira-assembler/${P}.tar.bz2
-	mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos"
-IUSE=""
-
-CDEPEND="
-	dev-libs/boost
-	dev-util/google-perftools"
-DEPEND="${CDEPEND}
-	dev-libs/expat"
-RDEPEND="${CDEPEND}"
-
-DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED
-	THANKS doc/3rdparty/scaffolding_MIRA_BAMBUS.pdf )
-
-src_prepare() {
-	find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
-	epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch
-	AT_M4DIR="config/m4" eautoreconf
-}
-
-src_configure() {
-	econf \
-		--with-boost="${EPREFIX}/usr/$(get_libdir)" \
-		--with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \
-		--with-boost-thread=boost_thread-mt
-}
-
-#src_compile() {
-#	base_src_compile
-#	# TODO: resolve docbook incompatibility for building docs
-#	#if use doc; then emake -C doc clean docs || die; fi
-#}
-
-src_install() {
-	emake DESTDIR="${D}" install
-	dodoc ${DOCS[@]}
-	dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} || die
-}
-
-pkg_postinst() {
-	einfo "Documentation is no longer built, you can find it at:"
-	einfo "http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html"
-}