Updated version for EMBASSY 6.1.0.

Package-Manager: portage-2.2_rc40/cvs/Linux x86_64

28 files changed, 307 insertions, 14 deletions

diff --git a/sci-biology/embassy-cbstools/ChangeLog b/sci-biology/embassy-cbstools/ChangeLog
index 93a7986d9fea..ed0540504d3f 100644
--- a/sci-biology/embassy-cbstools/ChangeLog
+++ b/sci-biology/embassy-cbstools/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-cbstools
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-cbstools/ChangeLog,v 1.2 2009/09/01 18:20:52 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-cbstools/ChangeLog,v 1.3 2009/09/01 21:19:37 ribosome Exp $
+
+*embassy-cbstools-1.0.0-r1 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-cbstools-1.0.0-r1.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-cbstools-1.0.0.ebuild:
diff --git a/sci-biology/embassy-cbstools/embassy-cbstools-1.0.0-r1.ebuild b/sci-biology/embassy-cbstools/embassy-cbstools-1.0.0-r1.ebuild
new file mode 100644
index 000000000000..bd08099299b6
--- /dev/null
+++ b/sci-biology/embassy-cbstools/embassy-cbstools-1.0.0-r1.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-cbstools/embassy-cbstools-1.0.0-r1.ebuild,v 1.1 2009/09/01 21:19:37 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS wrappers for applications from the CBS group"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-domainatrix/ChangeLog b/sci-biology/embassy-domainatrix/ChangeLog
index 53673f58f796..752a98c20b65 100644
--- a/sci-biology/embassy-domainatrix/ChangeLog
+++ b/sci-biology/embassy-domainatrix/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domainatrix
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.26 2009/09/01 18:22:22 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.27 2009/09/01 21:21:10 ribosome Exp $
+
+*embassy-domainatrix-0.1.0-r4 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domainatrix-0.1.0-r4.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-domainatrix-0.1.0-r3.ebuild:
diff --git a/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r4.ebuild b/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r4.ebuild
new file mode 100644
index 000000000000..2b34ce7fb491
--- /dev/null
+++ b/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r4.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r4.ebuild,v 1.1 2009/09/01 21:21:10 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="Protein domain analysis add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-domalign/ChangeLog b/sci-biology/embassy-domalign/ChangeLog
index e3950e1cfd34..f3d86e877b2c 100644
--- a/sci-biology/embassy-domalign/ChangeLog
+++ b/sci-biology/embassy-domalign/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domalign
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.17 2009/09/01 18:23:38 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.18 2009/09/01 21:23:02 ribosome Exp $
+
+*embassy-domalign-0.1.0-r4 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domalign-0.1.0-r4.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-domalign-0.1.0-r3.ebuild:
diff --git a/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r4.ebuild b/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r4.ebuild
new file mode 100644
index 000000000000..7b197b7492f8
--- /dev/null
+++ b/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r4.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r4.ebuild,v 1.1 2009/09/01 21:23:02 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="Protein domain alignment add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-domsearch/ChangeLog b/sci-biology/embassy-domsearch/ChangeLog
index 3457b5fc3f31..ae6d49d5dd4c 100644
--- a/sci-biology/embassy-domsearch/ChangeLog
+++ b/sci-biology/embassy-domsearch/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domsearch
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.16 2009/09/01 18:24:42 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.17 2009/09/01 21:24:16 ribosome Exp $
+
+*embassy-domsearch-0.1.0-r4 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domsearch-0.1.0-r4.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-domsearch-0.1.0-r3.ebuild:
diff --git a/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r4.ebuild b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r4.ebuild
new file mode 100644
index 000000000000..5bd357ba45a8
--- /dev/null
+++ b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r4.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r4.ebuild,v 1.1 2009/09/01 21:24:16 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="Protein domain search add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-emnu/ChangeLog b/sci-biology/embassy-emnu/ChangeLog
index 7d13734ca26b..655b15c13d21 100644
--- a/sci-biology/embassy-emnu/ChangeLog
+++ b/sci-biology/embassy-emnu/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-emnu
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/ChangeLog,v 1.26 2009/09/01 18:26:07 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/ChangeLog,v 1.27 2009/09/01 21:26:26 ribosome Exp $
+
+*embassy-emnu-1.05-r6 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-emnu-1.05-r6.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-emnu-1.05-r5.ebuild:
diff --git a/sci-biology/embassy-emnu/embassy-emnu-1.05-r6.ebuild b/sci-biology/embassy-emnu/embassy-emnu-1.05-r6.ebuild
new file mode 100644
index 000000000000..6a9adbf971a2
--- /dev/null
+++ b/sci-biology/embassy-emnu/embassy-emnu-1.05-r6.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/embassy-emnu-1.05-r6.ebuild,v 1.1 2009/09/01 21:26:26 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+RDEPEND="sys-libs/ncurses
+	${RDEPEND}"
+
+DEPEND="sys-libs/ncurses
+	${DEPEND}"
diff --git a/sci-biology/embassy-esim4/ChangeLog b/sci-biology/embassy-esim4/ChangeLog
index 515f8aaa8c1f..ea92f19bc38d 100644
--- a/sci-biology/embassy-esim4/ChangeLog
+++ b/sci-biology/embassy-esim4/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-esim4
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.25 2009/09/01 18:27:15 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.26 2009/09/01 21:27:55 ribosome Exp $
+
+*embassy-esim4-1.0.0-r6 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-esim4-1.0.0-r6.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-esim4-1.0.0-r5.ebuild:
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r6.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r6.ebuild
new file mode 100644
index 000000000000..93b01da52e42
--- /dev/null
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r6.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r6.ebuild,v 1.1 2009/09/01 21:27:55 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-hmmer/ChangeLog b/sci-biology/embassy-hmmer/ChangeLog
index 55f7d2b1a394..d109c4dd288f 100644
--- a/sci-biology/embassy-hmmer/ChangeLog
+++ b/sci-biology/embassy-hmmer/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-hmmer
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.27 2009/09/01 18:28:53 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.28 2009/09/01 21:30:32 ribosome Exp $
+
+*embassy-hmmer-2.3.2-r3 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-hmmer-2.3.2-r3.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-hmmer-2.3.2-r2.ebuild:
diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r3.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r3.ebuild
new file mode 100644
index 000000000000..c9d89b4e9c01
--- /dev/null
+++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r3.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r3.ebuild,v 1.1 2009/09/01 21:30:32 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS wrappers for HMMER - Biological sequence analysis with profile HMMs"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+RDEPEND="~sci-biology/hmmer-2.3.2"
+
+src_install() {
+	embassy_src_install
+	insinto /usr/include/emboss/hmmer
+	doins src/*.h
+}
diff --git a/sci-biology/embassy-iprscan/ChangeLog b/sci-biology/embassy-iprscan/ChangeLog
index 1cf3fa771066..03140bee822c 100644
--- a/sci-biology/embassy-iprscan/ChangeLog
+++ b/sci-biology/embassy-iprscan/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-iprscan
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-iprscan/ChangeLog,v 1.2 2009/09/01 18:30:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-iprscan/ChangeLog,v 1.3 2009/09/01 21:34:12 ribosome Exp $
+
+*embassy-iprscan-4.3.1-r1 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-iprscan-4.3.1-r1.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-iprscan-4.3.1.ebuild:
diff --git a/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1-r1.ebuild b/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1-r1.ebuild
new file mode 100644
index 000000000000..5507a68783fc
--- /dev/null
+++ b/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1-r1.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1-r1.ebuild,v 1.1 2009/09/01 21:34:12 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="InterProScan motif detection add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-memenew/ChangeLog b/sci-biology/embassy-memenew/ChangeLog
index 21212ffc6eca..20131c502c0c 100644
--- a/sci-biology/embassy-memenew/ChangeLog
+++ b/sci-biology/embassy-memenew/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-memenew
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/ChangeLog,v 1.8 2009/09/01 18:31:26 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/ChangeLog,v 1.9 2009/09/01 21:36:22 ribosome Exp $
+
+*embassy-memenew-4.0.0 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-memenew-4.0.0.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-memenew-0.1.0-r1.ebuild:
diff --git a/sci-biology/embassy-memenew/embassy-memenew-4.0.0.ebuild b/sci-biology/embassy-memenew/embassy-memenew-4.0.0.ebuild
new file mode 100644
index 000000000000..47f998c487f3
--- /dev/null
+++ b/sci-biology/embassy-memenew/embassy-memenew-4.0.0.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/embassy-memenew-4.0.0.ebuild,v 1.1 2009/09/01 21:36:22 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS wrappers for MEME - Multiple Em for Motif Elicitation"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+src_install() {
+	embassy_src_install
+	insinto /usr/include/emboss/meme
+	doins src/INCLUDE/*.h
+}
diff --git a/sci-biology/embassy-mira/ChangeLog b/sci-biology/embassy-mira/ChangeLog
index 7469b5c81841..bcd779ed5a7a 100644
--- a/sci-biology/embassy-mira/ChangeLog
+++ b/sci-biology/embassy-mira/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-mira
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mira/ChangeLog,v 1.2 2009/09/01 18:32:51 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mira/ChangeLog,v 1.3 2009/09/01 21:37:56 ribosome Exp $
+
+*embassy-mira-2.8.2-r1 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-mira-2.8.2-r1.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-mira-2.8.2.ebuild:
diff --git a/sci-biology/embassy-mira/embassy-mira-2.8.2-r1.ebuild b/sci-biology/embassy-mira/embassy-mira-2.8.2-r1.ebuild
new file mode 100644
index 000000000000..6e4dee78698b
--- /dev/null
+++ b/sci-biology/embassy-mira/embassy-mira-2.8.2-r1.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mira/embassy-mira-2.8.2-r1.ebuild,v 1.1 2009/09/01 21:37:56 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="Fragment assembly add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-mse/ChangeLog b/sci-biology/embassy-mse/ChangeLog
index 2f055ee5ed91..0f150559393c 100644
--- a/sci-biology/embassy-mse/ChangeLog
+++ b/sci-biology/embassy-mse/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-mse
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.32 2009/09/01 18:34:06 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.33 2009/09/01 21:40:02 ribosome Exp $
+
+*embassy-mse-1.0.0-r7 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-mse-1.0.0-r7.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-mse-1.0.0-r6.ebuild:
diff --git a/sci-biology/embassy-mse/embassy-mse-1.0.0-r7.ebuild b/sci-biology/embassy-mse/embassy-mse-1.0.0-r7.ebuild
new file mode 100644
index 000000000000..9109f3704f54
--- /dev/null
+++ b/sci-biology/embassy-mse/embassy-mse-1.0.0-r7.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r7.ebuild,v 1.1 2009/09/01 21:40:02 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Screen Editor"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+src_install() {
+	embassy_src_install
+	insinto /usr/include/emboss/mse
+	doins h/*.h
+}
diff --git a/sci-biology/embassy-phylipnew/ChangeLog b/sci-biology/embassy-phylipnew/ChangeLog
index db25cc882e0d..b026483abaae 100644
--- a/sci-biology/embassy-phylipnew/ChangeLog
+++ b/sci-biology/embassy-phylipnew/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-phylipnew
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylipnew/ChangeLog,v 1.9 2009/09/01 18:35:48 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylipnew/ChangeLog,v 1.10 2009/09/01 21:41:31 ribosome Exp $
+
+*embassy-phylipnew-3.68 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-phylipnew-3.68.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-phylipnew-3.67.ebuild:
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.68.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.68.ebuild
new file mode 100644
index 000000000000..9ef58b4508d8
--- /dev/null
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.68.ebuild
@@ -0,0 +1,14 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylipnew/embassy-phylipnew-3.68.ebuild,v 1.1 2009/09/01 21:41:31 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of PHYLIP - The Phylogeny Inference Package"
+LICENSE="freedist"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-signature/ChangeLog b/sci-biology/embassy-signature/ChangeLog
index c8e296f2b12f..addfa76f9b19 100644
--- a/sci-biology/embassy-signature/ChangeLog
+++ b/sci-biology/embassy-signature/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-signature
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.16 2009/09/01 18:37:14 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.17 2009/09/01 21:43:15 ribosome Exp $
+
+*embassy-signature-0.1.0-r4 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-signature-0.1.0-r4.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-signature-0.1.0-r3.ebuild:
diff --git a/sci-biology/embassy-signature/embassy-signature-0.1.0-r4.ebuild b/sci-biology/embassy-signature/embassy-signature-0.1.0-r4.ebuild
new file mode 100644
index 000000000000..310f0c4bdfb7
--- /dev/null
+++ b/sci-biology/embassy-signature/embassy-signature-0.1.0-r4.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/embassy-signature-0.1.0-r4.ebuild,v 1.1 2009/09/01 21:43:15 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="Protein signature add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-structure/ChangeLog b/sci-biology/embassy-structure/ChangeLog
index 534e51b090b7..196d7b34e31c 100644
--- a/sci-biology/embassy-structure/ChangeLog
+++ b/sci-biology/embassy-structure/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-structure
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-structure/ChangeLog,v 1.16 2009/09/01 18:38:36 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-structure/ChangeLog,v 1.17 2009/09/01 21:45:54 ribosome Exp $
+
+*embassy-structure-0.1.0-r4 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-structure-0.1.0-r4.ebuild:
+  Updated version for EMBASSY 6.1.0.
 
   01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
   embassy-structure-0.1.0-r3.ebuild:
diff --git a/sci-biology/embassy-structure/embassy-structure-0.1.0-r4.ebuild b/sci-biology/embassy-structure/embassy-structure-0.1.0-r4.ebuild
new file mode 100644
index 000000000000..5c1c8ceeb00a
--- /dev/null
+++ b/sci-biology/embassy-structure/embassy-structure-0.1.0-r4.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-structure/embassy-structure-0.1.0-r4.ebuild,v 1.1 2009/09/01 21:45:54 ribosome Exp $
+
+EBOV="6.1.0"
+
+inherit embassy
+
+DESCRIPTION="Protein structure add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"