sci-biology/rebase: Version Bump

Package-Manager: portage-2.2.7/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 55 insertions, 22 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index d5b1888ee3db..8ba31e7ad297 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.118 2013/11/06 12:32:47 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.119 2013/12/01 17:02:19 jlec Exp $
+
+*rebase-1312 (01 Dec 2013)
+
+  01 Dec 2013; Justin Lecher <jlec@gentoo.org> +rebase-1312.ebuild:
+  Version Bump
 
   06 Nov 2013; Justin Lecher <jlec@gentoo.org> Manifest:
   Fix tarball and ist checksum, #490360
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 264a157feec3..b5a3eaf2dc5d 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,32 +1,14 @@
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-Hash: SHA512
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 DIST rebase-1202.tar.xz 25806116 SHA256 ac3dae93c43d44721a35cb97b1360500782367190750e47cd7dc9d71c2a6d851 SHA512 261e21b6bd3e0242f2936a635195414d4fda79ff8dc651a5e932b75785ffc632e9bdcee6207b3a0f0136f20197e80e7d38f3ddf52e199d56edca76a338148f4a WHIRLPOOL 1179758d2c558d16041526a495cc7732148adc0a86dd1f83a7423e0362d44c91cfb6171209fefb199ab6ed7b2bbc2743524c24b1caffdc8c14afbf8cec70318a
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 MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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diff --git a/sci-biology/rebase/rebase-1312.ebuild b/sci-biology/rebase/rebase-1312.ebuild
new file mode 100644
index 000000000000..11b2784b958b
--- /dev/null
+++ b/sci-biology/rebase/rebase-1312.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1312.ebuild,v 1.1 2013/12/01 17:02:19 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}