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authorJustin Lecher <jlec@gentoo.org>2014-09-30 10:08:01 +0000
committerJustin Lecher <jlec@gentoo.org>2014-09-30 10:08:01 +0000
commitd46071dbddc25b3fa1169636d364fc8c51c3de85 (patch)
treef3ae9e5474e01f2680fe11f05febedef3be8be2a /sci-biology
parentupdate deps to current python-dateutil, versioning set in source wrong as it ... (diff)
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sci-biology/rebase: Version BUmp
Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog7
-rw-r--r--sci-biology/rebase/Manifest26
-rw-r--r--sci-biology/rebase/rebase-1410.ebuild46
3 files changed, 55 insertions, 24 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index c3f17a578c6f..4f167b5630cd 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/rebase
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.128 2014/09/15 17:00:06 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.129 2014/09/30 10:08:00 jlec Exp $
+
+*rebase-1410 (30 Sep 2014)
+
+ 30 Sep 2014; Justin Lecher <jlec@gentoo.org> +rebase-1410.ebuild:
+ Version BUmp
15 Sep 2014; Justin Lecher <jlec@gentoo.org> -rebase-1111.ebuild:
Drop ebuild with deprecated EAPI
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 99a41537b21a..85089c725284 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,32 +1,12 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
-
DIST rebase-1403.tar.xz 56541864 SHA256 947f40e42fdd58f0509043c174e87dc83fb74c9348d3c40bea878c99133fd5b1 SHA512 7f9a6b4f0a5d1f79f5aa06ae87514124d4ed5472d0dda4dbe110d5a6e8bbfaabf56d01fac164f40507a62ffd1816b4675461a66a6ff56e92bfa204140430d04c WHIRLPOOL 48cc05dd873e3674dea592a4fe35454028d58bcd3e334fd88ca89b30d2ba741db9086885a358779ab6f592c81e0aa8b77afa21917ec4176898d6351a49372a55
DIST rebase-1406.tar.xz 92309328 SHA256 70d2c174c64416432b1afa9c26cbe17d5fe6c5514c8f79ab74cfa3bdfe26c03f SHA512 f73c4614847c20d21194fdd71cb387f2e5a4911420b9a8fe854f11c012a97089d34d5f9242a398601f4da2f3af6095d5746d6889014144404bdc71426bbaa1e1 WHIRLPOOL 604497a74d89f590e84e3e7953765b0b94d9310e7c0b09e1cdd8cca659790e5a86c8b353d3e2f4f0c7b6a10e35adcef959d9d1a8ef3d335b9804f28506197083
DIST rebase-1408.tar.xz 61903408 SHA256 30ae3e5fa9d0af9a92a13a6146a9ae9ee6d31af09ad600e28fc7aedb36c4ce18 SHA512 b753a1bd765124d60b6014bae55f03e322b54722c482bf70688163b585a1a757d15a03e397a33d1145b0aae00c85a0ee7300db93bc10cd454603081b9ae21cca WHIRLPOOL 4beb81d20a13c152bbbd1893bd3810a31311a93dd7be04ea15e160bd83ed56f4ff4ccd78b75a4ccac7b356ac0e6faec1da234162b13bb9ffc684f8f7959cb207
DIST rebase-1409.tar.xz 62436500 SHA256 fca116f98ca996fded3edaef27ce0be190ec1b66fb03bfd23513dd531e01d8a0 SHA512 a054d4b6b2bc5a803c742af31a11c44f12bd7ad0479be93b3414765b1ffaa0bd2c28fc69517ad840efb2d9dedd964354ce1ea45ba5f88fa252f9014d1bb621c5 WHIRLPOOL 2ca0829c430600d8ca96570c5072ef4b7cd7679405acdfaa70f28c7bf6ac39c2c00fa1da58abfd99785c1d5be691cd8c0250161f18f7e9502605bf3b311ef62c
+DIST rebase-1410.tar.xz 63356808 SHA256 c7440e82922d3013331e54d1111b6199446410ef6e7ecc15ad537cdbc150e586 SHA512 7df88c0a4b0abcbd75288c10209c8b1b9a3dcc8bc906af12b47e99e61251c7fa4dafa135342097f31545bef1584e129cbc708b3e4154cb211b7f2a0bc7df16b7 WHIRLPOOL b38239de5f39202cd639ab477d254cde747a7285851fa0a5c69b52908eaadb3b1dab302d8250227cc4a47f43d22597754a4d629df5fb0ae21ae3f1746d87a6da
EBUILD rebase-1403.ebuild 1201 SHA256 1ebb311224dd7f0661580f2da61b450c9b85c646d3e0a497af25b196118773a5 SHA512 7ffb9084a8f9b5fe024bc50c4188b27f34f0134210ac046bf26d1da0624492fbb3c326f981626cb72694f63372280694c8e8f31bcf7f009a0fac66f95e17283b WHIRLPOOL a4ce866fe3de417dae53cff51f61ff8cf6711cc2f5b4bf66dd1f3c58b2372e422b787ada1b25d0bb4045376d0d055dc207ee8a684caae689d2cd61188ff4b16a
EBUILD rebase-1406.ebuild 1205 SHA256 a8548a79e7c2a65c0cc894fddde404a16a7b49875009c4da7005afeaffbf3b0f SHA512 3c35bdfed36aeff9c5d5607b45389f9ce924289628b5fe54b630ce7022ddf35c495b65fc4c7f09660060252938a3d6ec688a5a651498e64b02d66608b92b60b5 WHIRLPOOL 2da6dc94b8a71f3d97922b46be0feff6e14c308dc5883576cc2a39f018abe4d3d84f9c5e5d091d5bb95ccf2be63bb64d7bd83a2631926ee2cedae74a4112c2d9
EBUILD rebase-1408.ebuild 1205 SHA256 57672544bc820af1ebfc4c8b191c37a88c454bee77af8cb3be59ddab465a95f6 SHA512 6d29e34150eac405a9de00492113e1d3805fbbb77803446c17ccd8b966cb0794ea44e450478fb32f38084ca1eb3e5e3ac6f3d8cba14fbb2d66da7e006735f655 WHIRLPOOL 45fee0babb035aaa238d93535987a2b4124c57f57a9837c673b47a6a3759ddca2766efc15b59ff636a79ccde0c25a84ad7db31ebf201dc9006c0097d5949ab1f
EBUILD rebase-1409.ebuild 1205 SHA256 1485dec96fc9662cc0dc18c751424291fda46ae8347ab63d711f743c58fe2d88 SHA512 b9e089982ec146b37e6586397bebac5f8b80026623b35e8c88e88977e3fc27e1b802d9560eea5ed83344add84ff0e8bf120a0d3364c1f5fd54d860c98377df60 WHIRLPOOL 5a8363dfc8983f46494d12cd0b2c74e7fd3db1c0f10a762db944fe2acb9d1c959045eb850eb79335b95f0a959dd24596e074c21d9c677280f933939b48b7208a
-MISC ChangeLog 16679 SHA256 207f4306c9f099ee72b156b8b8d7123f83fb9f3628bb832396e280ecda411611 SHA512 687772a689ee3285090e8d9a827b570261ec2fc302505c9d19817e8aea093348efaf56f981bd45750488d8cae637f7b2bde7c5562674b866741eb57dcbeb2f72 WHIRLPOOL 4df291ff803ba1519c8bd252224850f6a3636a9b127a1d41f4383075d6ffc5faa7f1f8437796f1b22f5fc6fad1095841e7095ae27ead6e03e9e78439ebbba5f0
+EBUILD rebase-1410.ebuild 1205 SHA256 b37aef663cd5fbc21cce58e968d87a5f2ccfe7e818b971d4c4ca3da7e71092dd SHA512 02b25e2bc4cf622a706d0a9c409d412c9b3b9d9cb2067fdab7dd349532af18e33a00e18020b5e11f74497fa5739ae4aaf01155b2164bde8b842ecd7c29108a76 WHIRLPOOL 0807ca894cd641640ca439928a0b7a2a61bbf29118ebf44457dc3f6a5c49a5e9b0746ca37bded4a3629340688e64a9c7b09372b4c07afcb79dae5c7652bf016f
+MISC ChangeLog 16791 SHA256 c1f8b489c50afdc7dfe1c5213b501e0fd2c8054c629874710895aa21aa0fa987 SHA512 acc64803ca1dd9f55ba656affc7c8214310a51ed6f9fb904b5ef479839665c11a14d42b53d38794f524d5b3a76dec2450fb44189dc90a2f28b8206cd03c72816 WHIRLPOOL 7cbd250780094264d4c088490e07b739c762db1c97511760d1d28c8b4a4fa3d9f291b9e580f9ad03f0d5e8fd6a55bacc148b4850a2d1b3bf9d78d21a36df111e
MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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diff --git a/sci-biology/rebase/rebase-1410.ebuild b/sci-biology/rebase/rebase-1410.ebuild
new file mode 100644
index 000000000000..ce430ca0746e
--- /dev/null
+++ b/sci-biology/rebase/rebase-1410.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1410.ebuild,v 1.1 2014/09/30 10:08:00 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}