sci-chemistry/aria: Drop old; punt base.eclass

Package-Manager: portage-2.2.8/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

5 files changed, 24 insertions, 201 deletions

diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog
index bc0b8fc5cfd9..525718cb9554 100644
--- a/sci-chemistry/aria/ChangeLog
+++ b/sci-chemistry/aria/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/aria
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.21 2013/10/09 14:36:29 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.22 2014/01/06 12:00:45 jlec Exp $
+
+  06 Jan 2014; Justin Lecher <jlec@gentoo.org> -aria-2.3.2-r4.ebuild,
+  -aria-2.3.2-r5.ebuild, aria-2.3.2_p20130826.ebuild:
+  Drop old; punt base.eclass
 
 *aria-2.3.2_p20130826 (09 Oct 2013)
 
diff --git a/sci-chemistry/aria/Manifest b/sci-chemistry/aria/Manifest
index ff1e6f9e6533..e9dcc05cce3a 100644
--- a/sci-chemistry/aria/Manifest
+++ b/sci-chemistry/aria/Manifest
@@ -5,29 +5,25 @@ AUX aria-2.3.2-python.patch 963 SHA256 87f5f27484eddb6ce47fab2a2df6da15fa37cdef2
 AUX aria-2.3.2-through-space-2.patch 6049 SHA256 585c963b5b918865175208c44ca256b23062423c9a8111506111fd04e6ac405e SHA512 18e57343aa7d609c11edfc5bbf9aa831c190729ee0dea8f3c1d8103f46c5d1a225a5acda50a09ff26587e119f4a9a0e35af5388d4a325dace7925352f829714d WHIRLPOOL 058c58f4a3319c20410be74541b991280f2b61436a55ff715db24e1351ddb33d4c95977441df27c53929d6d4474923e751e998f07e5399a1b92ec065831e2610
 AUX aria-2.3.2-through-space.patch 5040 SHA256 99c547ad5fb85401c39187b9a708fc7332c36be6e467bd834cb551a723fd84fb SHA512 1827cf859af84ced8e0f368370d0f3814de5bb74f7d6e832e4a904dce15d62e1dc660d6c1bda9c148d554ba883ec35bfc3fb6c165c8954b759f91a9c9e102976 WHIRLPOOL 1298a5152a6676b2f6f481c72a82e4af802b4b5c4327d96346e1d184e288dfb2eeaf8b097f5bf6dccf079b8b74ba88212b795ca28c9a42c22302eb7dfb89ed7b
 DIST aria2.3.2.tar.gz 1836270 SHA256 30727ea8bdc2e3b44e5970545008fcfa07fa59aa28b76824956a2aa71daa9615 SHA512 009a1d0079f5cc162dc732749ddd2b33297268f0d988b2f37bda4ed50c7764ceef7ae5b56b322c7ac79427a4a2a92d1239199891445cb5e2b3d0908ed670e2aa WHIRLPOOL f18af5b751e79c92e04f4dc12b6b806a1c505b269559a2342bdd6280b790f9f0df9bb4afe366af03beaf09af0128c6b68c39bc66603d51ad24914c78b2579cf3
-DIST aria2.3.2_03.25.2013.tar.gz 1878290 SHA256 6a92d8200d73c1f490623a18a56fa93f10f1b8765a4a1d2039a8b41c447bc7ac SHA512 4d6a97ab3394ec849e6023b5202eb89df1a06f2c79ed9c165cb349fe50a9c5f8c0f4e2569996567ba76444efb3057e492253ae58618c8f53ea10c1e9a9efa7e0 WHIRLPOOL 48b2c80d64a2f8635dc84aeb4cff670d137246b44572b01b12afa44db35cecb08033597ca55576bdb10af439ca274d3770cce27165d6eba3d73cdc9ab9f1346c
 DIST aria2.3.2_08.26.2013.tar.gz 1878602 SHA256 b9b892de2070a77812733faf4b6a1dbec4bba6dec80e5630088cab8b11cbfaf0 SHA512 a6d8c45218f5d494174587a5f8f1feec940ac8cc4cd7b707dac65b2378219ecf27967e70807e6cb7ae22a7d4aec7239af763f077ad7183c078b1991cac71bc3e WHIRLPOOL 59c0b79fab40201d903c484bf63e8339c235207306efc848965d260c02b00c9a408297df0f211cf45f30d13ec35175bf7d566bb5c6d59b944eb22d9aacf0384d
-DIST aria2.3.2_latest.tar.gz 1861854 SHA256 fc2a197e7098f58e603e4cef724986535e9c356a180b86466527a8616a95fc77 SHA512 8ace8e35e351e9b2b4b7d00ab4a5acbb7295e2fef1de54d5a8e60ae4550c5706fbbd0bbe960443ec4d26bd2861bc574deb53c9ab82865600919f0b022dbda3ce WHIRLPOOL 56a4b37f4444fc5388459579cc9ac6381e9a6dbee983ff4a73ece5768b6cc1250ca36d4aadf9a8d5ef289b45117d5e850b7032663a41bb297a8c6c9061efd7ae
 EBUILD aria-2.3.2-r3.ebuild 2133 SHA256 a3dfc04c836c454e8a6b47cab2428e050803f38f8789ac270e00a18bca169e4a SHA512 dfe16aac87a4c2b7c1e9e2a3ec4775776def02e4971d7b64046aeb2afcdb1da5f1aa2b9260d3012004030b90d918dda078daffc75c9d3256be1fdc053338645d WHIRLPOOL 6c8f1da099c22ec2907bc825b99afb7b171fcd31e5d63f1244504dd2837a9d58dc1629e03e79b828ab7f535bd5043a844aaef21a268b026585fa5bd2be0cb692
-EBUILD aria-2.3.2-r4.ebuild 2058 SHA256 25c368f3e2cd3798e242dc725250ab6fa5df63460f7bda6256b9fa7c92218ec6 SHA512 1f65173412dc055e5838eee4e135999db2b28ff64e3317fedd7a098a6269f5a595d2bf38bd6bce5deaec5b17828b61f25584f76202681653cd667fa2d023cc15 WHIRLPOOL b6ac4b93d3d3fab566f6b740701249f45c7fb7ca87eb680d5b5c8d113ec1514727f159e0c2b3cf68ebebdc731acd9a68cd7dedecacf812e5b88fac909a72c5b3
-EBUILD aria-2.3.2-r5.ebuild 2032 SHA256 432de9b506f6aeb212f6c6a341ecfd78d8ef6d8a1c2f70aa43e00354f74b2caa SHA512 07a49c6fba92ac5fddcaf787dca7ad9ecc4e23685316f7050f93b3a9b5ad6a2ae3413781ec087904ff2e17f9220efc3c30c0ea37e23d3190a01f37685738a057 WHIRLPOOL 1257c66be3ec1d999085fb4ee3e026badbab28ff804970082f4f1ad52b7f213f73a36774560f4226ebd5000f0bead260ba4e0e0bcfb724f33616ccd233eb2676
-EBUILD aria-2.3.2_p20130826.ebuild 2045 SHA256 a043305b6d3775d5db960220e53faf62ee59cbd44cf22404e9cae6d92dcbcf75 SHA512 f082aae9fa5602a61d10eecac742ac58eb9ad6aa98150a1be9e4144b7b4c2afcae8b17ea1443ac5f3c6ec53c47db5de8997bbe7ebf5148b007c0a044e1432ee3 WHIRLPOOL d773e049c48c82a221f64c9b1bd3d6e2b7b3a8f986eff0457dcfbbd5a15459006e42ee8d03fd99a086132a65647a3b893940467d2d4c2a3d786c2ee23a1064e3
-MISC ChangeLog 3078 SHA256 ed4ce7d52ea673c2f346141730647a5a3e9ee64ddfdbd5351a98ce824bc9d4f7 SHA512 29b8412b00ec7871040f700354acbe00735fc83cf1412f5f011826e50a2f491e2582d927ec3bdbdcc1c4f6018084f2677bea011ab928ec4f72d0560a82cb1a53 WHIRLPOOL b273073eb1f1baa7d864a4a02b66447adc033d5362f9f3fd957311058601e99214b6a9a95d7a7dd1b193cc897bfa142b35c8665d04a551cff23b81d9737062e8
+EBUILD aria-2.3.2_p20130826.ebuild 2040 SHA256 488ec2ae031402c05c5d667aaf90d58bda6a4c897c344d0978fe1a12d1db8368 SHA512 d91477ae046dee94abf33874e23c2de236ff70e05f5346ff8665d3e39b441febc9fefa4407be9b14a2a2aa4669e219bd64dfb326d604ca608845d25b756844c9 WHIRLPOOL c0b5ad33517aa0a18e83529b2f457bc5219ef72ae557433dd00ae5e262175ce767b67ec599b0dd42b12f408490c85a5e409dec0405889b6ebbab1a2ee04557ef
+MISC ChangeLog 3232 SHA256 64b03e7c4f95fc3098bda03689aaefa2415e560e750f0871012d8311bacbbc17 SHA512 1fb41b8c4f185473f9020d143e52238b9ce0c8d16d2099ed33b813038a2c683643c80bea12c159b1d69488f680a7601429363102163bd86cdf55d3e2003217f2 WHIRLPOOL 228d558673aac1e3e63352ad06b2935520cf20b7c234c4a91c0263c9d969223572a4edf2f3f8db85468fa179b3ae6ecebb1160abc0a42cce46fa37e91319ec7e
 MISC metadata.xml 234 SHA256 8297e76ecd2cb828f604e9f138b263179eb84beb640215a0f60d7613eb46bb7f SHA512 0e94c0e6570a9267a39968d81c3b80680ccbc6eebb62199e4830b021a114c94a0de17ef2103cef62b7e27da1f51f225a30abb802aff82140ae6dc43366113d31 WHIRLPOOL fa6d4d90b092953b88ed3ad03e1e8c189296d268b39d13a4b4dcb78f0c4456341e3f1b44eea0860054fee43079179cb7cf7a912acf1fbe693ecdca6d9a65f081
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diff --git a/sci-chemistry/aria/aria-2.3.2-r4.ebuild b/sci-chemistry/aria/aria-2.3.2-r4.ebuild
deleted file mode 100644
index 0501be72de86..000000000000
--- a/sci-chemistry/aria/aria-2.3.2-r4.ebuild
+++ /dev/null
@@ -1,88 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r4.ebuild,v 1.2 2013/01/17 20:24:41 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
-
-inherit base eutils python versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_latest.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
-	sci-chemistry/clashlist
-	sci-chemistry/procheck
-	sci-libs/clashscore-db
-	dev-python/numpy
-	dev-python/matplotlib[tk]
-	>=sci-chemistry/cns-1.2.1-r7[aria,openmp]
-	dev-lang/tk
-	>=sci-chemistry/ccpn-2.2
-	dev-tcltk/tix"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
-	einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
-	einfo "and place it in ${DISTDIR}"
-}
-
-src_test(){
-	export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
-	export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-	$(PYTHON) check.py || die
-}
-
-src_install(){
-	insinto "$(python_get_sitedir)/${PN}"
-	doins -r src aria2.py || die "failed to install ${PN}"
-	insinto "$(python_get_sitedir)/${PN}"/cns
-	doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
-
-	if use examples; then
-		insinto /usr/share/${P}/
-		doins -r examples || die
-	fi
-
-	# ENV
-	cat >> "${T}"/20aria <<- EOF
-	ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
-	EOF
-
-	doenvd "${T}"/20aria
-
-	# Launch Wrapper
-	cat >> "${T}"/aria <<- EOF
-	#!/bin/sh
-	export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
-	export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
-	exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
-	EOF
-
-	dobin "${T}"/aria || die "failed to install wrapper"
-	dosym aria /usr/bin/aria2
-
-	dodoc README || die
-}
-
-pkg_postinst() {
-	python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
-	python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/aria/aria-2.3.2-r5.ebuild b/sci-chemistry/aria/aria-2.3.2-r5.ebuild
deleted file mode 100644
index cc9f21735a85..000000000000
--- a/sci-chemistry/aria/aria-2.3.2-r5.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r5.ebuild,v 1.2 2013/05/29 16:14:45 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="tk"
-
-inherit base eutils python-single-r1 versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-DATE="03.25.2013"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_${DATE}.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-tcltk/tix
-	dev-lang/tk
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/matplotlib[${PYTHON_USEDEP},tk]
-	>=sci-chemistry/cns-1.2.1-r7[aria,openmp]
-	>=sci-chemistry/ccpn-2.2[${PYTHON_USEDEP}]
-	sci-chemistry/clashlist
-	sci-chemistry/procheck
-	sci-libs/clashscore-db"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
-	einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
-	einfo "and place it in ${DISTDIR}"
-}
-
-pkg_setup() {
-	python-single-r1_pkg_setup
-}
-
-src_test(){
-	export CCPNMR_TOP_DIR=$(python_get_sitedir)
-	export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-	${PYTHON} check.py || die
-}
-
-src_install(){
-	python_moduleinto ${PN}
-	python_domodule src aria2.py
-	python_moduleinto ${PN}/cns
-	python_domodule cns/{protocols,toppar,src/helplib}
-
-	if use examples; then
-		insinto /usr/share/${P}/
-		doins -r examples
-	fi
-
-	# ENV
-	cat >> "${T}"/20aria <<- EOF
-	ARIA2="$(python_get_sitedir)/${PN}"
-	EOF
-
-	doenvd "${T}"/20aria
-
-	# Launch Wrapper
-	cat >> "${T}"/aria <<- EOF
-	#!/bin/sh
-	export CCPNMR_TOP_DIR="$(python_get_sitedir)"
-	export PYTHONPATH="$(python_get_sitedir)/ccpn/python"
-	exec "${PYTHON}" -O "\${ARIA2}"/aria2.py \$@
-	EOF
-
-	dobin "${T}"/aria
-	dosym aria /usr/bin/aria2
-
-	dodoc README
-	python_optimize "${D}/$(python_get_sitedir)"
-}
diff --git a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
index 774b575adf8a..acad8dba43ca 100644
--- a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
+++ b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild,v 1.1 2013/10/09 14:36:29 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild,v 1.2 2014/01/06 12:00:45 jlec Exp $
 
 EAPI=5
 
 PYTHON_COMPAT=( python{2_6,2_7} )
 PYTHON_REQ_USE="tk"
 
-inherit base eutils python-single-r1 versionator
+inherit eutils python-single-r1 versionator
 
 MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
 DATE="08.26.2013"