sci-chemistry/pymol-plugins-msms: Bump to python-r1.eclass

Package-Manager: portage-2.2.7/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

4 files changed, 81 insertions, 12 deletions

diff --git a/sci-chemistry/pymol-plugins-msms/ChangeLog b/sci-chemistry/pymol-plugins-msms/ChangeLog
index 1f8c1a94af08..af13415c6d6d 100644
--- a/sci-chemistry/pymol-plugins-msms/ChangeLog
+++ b/sci-chemistry/pymol-plugins-msms/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/pymol-plugins-msms
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v 1.2 2011/03/22 21:09:25 jlec Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v 1.3 2013/12/02 11:10:59 jlec Exp $
+
+*pymol-plugins-msms-100415-r1 (02 Dec 2013)
+
+  02 Dec 2013; Justin Lecher <jlec@gentoo.org>
+  +pymol-plugins-msms-100415-r1.ebuild, metadata.xml:
+  Bump to python-r1.eclass
 
   22 Mar 2011; Justin Lecher <jlec@gentoo.org>
   pymol-plugins-msms-100415.ebuild:
diff --git a/sci-chemistry/pymol-plugins-msms/Manifest b/sci-chemistry/pymol-plugins-msms/Manifest
index bfa642e5069e..2a98336518ca 100644
--- a/sci-chemistry/pymol-plugins-msms/Manifest
+++ b/sci-chemistry/pymol-plugins-msms/Manifest
@@ -1,5 +1,26 @@
-AUX 100415-msms.patch 1687 RMD160 fd2d64ddc65fbb611425de24e93a717eeed88bf9 SHA1 2a1d31da62408deb3d087f0f5833fb8c7f28b108 SHA256 50509fe85feb3e12d35d0a1aba8fe2edef5dc557d06617bb1fcaaff7dae3938a
-DIST pymol-plugins-msms-100415.py 62320 RMD160 b1f4fc49ea680d21395aa9b38436264c276b75ae SHA1 9910134fef01269d85d4c05273ca2d5484485009 SHA256 1452acdcf8b13f5af22da563d44d51aca9f8fdd108dd7a0548ec41941cb463a5
-EBUILD pymol-plugins-msms-100415.ebuild 1281 RMD160 807a2a1b3236ea34f40350f753d1699608ebe487 SHA1 930366d67123d844057754d4b22a9bbbc91864a1 SHA256 99644f566dd298d2c0325d789cb49eab8e31727d36b105b818d4c3d3c5e7b33d
-MISC ChangeLog 524 RMD160 bd27f2a2aa614c4d0570bdcb987811be1bf20efd SHA1 2a43d8ed1d64478a94e5524485d53087230145af SHA256 df41ab38915913c606c32feb0f808f12e8518dcbe9449499f99fe90cf16d6593
-MISC metadata.xml 658 RMD160 4a761e7abe5e0980f86f4a6f4933b906a2eb8434 SHA1 809ba327380c953ea3e5a6a85369b7e7e2242cde SHA256 e25136f83d45a31c989d60615fadc84c091df1609af30d17cb3081cfeeb3b18a
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA512
+
+AUX 100415-msms.patch 1687 SHA256 50509fe85feb3e12d35d0a1aba8fe2edef5dc557d06617bb1fcaaff7dae3938a SHA512 52410d467c314578cd22e777ae45a0012203fd21d2afa6ff329fa67db6d7ee2cb381558ce6aef48a1305a572f9218cf962ab1fc552ebe1873f94a4d6d2db1bcf WHIRLPOOL e3dfc92ea73765e9a236ded4ceaa9d7b7f84b0a554e0b87a328b8f5ad1a703a024d02ed847d7d2ba2eaed38ae3f42bbe562f036b23cd2446d72f02ee5eb20b0d
+DIST pymol-plugins-msms-100415.py 62320 SHA256 1452acdcf8b13f5af22da563d44d51aca9f8fdd108dd7a0548ec41941cb463a5 SHA512 924d89836f92d0be52d7534cbe6dc9338dac1c2263a51900ab62dbe96e4f54f565dbaa6bdf51236d8ea8e9042aa09283a117f5285561b252177a5a32f3876489 WHIRLPOOL c5889b3543ac554083b76c38bb53fad1f001bd46f6686b0cdc36c1a7e576de3dc9a9bba0b459e0d928e30aec21ab09b98a0a8eb128fa64fc5b4228ca9ad7c0e4
+EBUILD pymol-plugins-msms-100415-r1.ebuild 1150 SHA256 12bc4175d8e9fb6ca738e47ef228da454be701f43806b5358942a93fdf66a75a SHA512 7e238243ab58812e55e8fa38f48fe1487fa71e2651ae9f90e6e1ddda30dd10103da1cfd5ebedc4069e8c08d76f650939c8d79aa4b2db101bad1076f3395fb716 WHIRLPOOL 1bb57ae3dcf0e8a6da2cdbd8fb7836754d572cac3ea97ab341b42457d635274eaf4123396a3133eb3c3a0a2da7f5628760f719508ad695db0ca8efbbf3ab6b32
+EBUILD pymol-plugins-msms-100415.ebuild 1281 SHA256 99644f566dd298d2c0325d789cb49eab8e31727d36b105b818d4c3d3c5e7b33d SHA512 376407c77ab256a6b261b811c6da2e04f284f2ab6abc5786cacbd8727fcd1ceee6ee1df53164efd0fb64df87f0cd36ed4f5b8b72e1fc3609620962846d598af4 WHIRLPOOL af718b13de2a6e5a713eb87e2b25add11e30c65687d74ed39b33dd6ad2978f0f961f364a07a0cbd480f04475762a0d687ce310f58765ab7e698a3b79ed6be86f
+MISC ChangeLog 698 SHA256 a71a1b2f16845ce359ccab70e91abdf659fa82338c9340c518e584556ed9cedf SHA512 5bc4cc7d0269560998c3ab1f0e4883075f76b1046ffbf99bba6d5bde26fe36bef4cb49543cb386acc208ff239504e9a59e697cef9e859b7e217e3666b672d65b WHIRLPOOL 72251bb83ccf1d2ec3e899ac4a3b4daf4c21c4623f29f1bb728a23069048b7f2881def5f530da477499ffdac391b2300091844298aad10854fff23d5d4c2ab58
+MISC metadata.xml 668 SHA256 e7b0d59611b2fc4213718722eece9cf8147cf34fde7126ef53391fe356c3c540 SHA512 15c4f21b08dd709c686b2504a3c1b588776f81cfd2fd4a8c29b8a9b8b9419e07cbf242da4b4ecd45229e0c9023cb491449560284c1acd6d0f1125071a87bf973 WHIRLPOOL 2fb4113d2fe36a639c7657d38578e3f7e1a8b562a42ef1c8004b7199038fcdfe5db07fdd3e2ce1b769e70c96487331fa982dfb5c3c39c6bc4318ab6fa7976a74
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.22 (GNU/Linux)
+
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+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/pymol-plugins-msms/metadata.xml b/sci-chemistry/pymol-plugins-msms/metadata.xml
index 53db03dc2118..c6f92c968349 100644
--- a/sci-chemistry/pymol-plugins-msms/metadata.xml
+++ b/sci-chemistry/pymol-plugins-msms/metadata.xml
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
-  <email>jlec@gentoo.org</email>
-</maintainer>
-<longdescription>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+  <longdescription>
 MSMS is an excellent tool for computing protein solvent excluded surface (SES).
 MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and 
 displaying its results in PyMOL. 
diff --git a/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild b/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild
new file mode 100644
index 000000000000..aadcea514255
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild,v 1.1 2013/12/02 11:10:59 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils python-r1
+
+DESCRIPTION="GUI for MSMS and displaying its results in PyMOL"
+HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html"
+SRC_URI="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/pymol_script/msms_pymol.py -> ${P}.py"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="BSD pymol"
+IUSE=""
+
+RDEPEND="
+	sci-chemistry/msms-bin
+	sci-chemistry/pymol[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}"
+
+src_unpack() {
+	mkdir "${S}" || die
+	cp "${DISTDIR}"/${A} "${S}/" || die
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-msms.patch
+	sed \
+		-e "s:GENTOOMSMS:${EPREFIX}/opt/bin/msms:g" \
+		-e "s:GENTOOXYZRN:${EPREFIX}/usr/bin/pdb_to_xyzrn:g" \
+		-i ${A} || die
+}
+
+src_install() {
+	python_moduleinto pmg_tk/startup
+	python_parallel_foreach_impl python_domodule ${P}.py
+	python_parallel_foreach_impl python_optimize
+}