diff options
| -rw-r--r-- | sci-biology/phrap/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/phrap/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/phrap/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/phrap/phrap-1.080812.ebuild | 48 |
4 files changed, 72 insertions, 0 deletions
diff --git a/sci-biology/phrap/ChangeLog b/sci-biology/phrap/ChangeLog new file mode 100644 index 000000000000..611942cb2297 --- /dev/null +++ b/sci-biology/phrap/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/phrap +# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v 1.1 2008/12/31 00:28:51 weaver Exp $ + +*phrap-1.080812 (31 Dec 2008) + + 31 Dec 2008; weaver <weaver@gentoo.org> +metadata.xml, + +phrap-1.080812.ebuild: + Import from Science overlay, bug 114094. Thanks to Brady Catherman and Martin + Mokrejs. + diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest new file mode 100644 index 000000000000..3c1fcf45fc63 --- /dev/null +++ b/sci-biology/phrap/Manifest @@ -0,0 +1,4 @@ +DIST phrap-1.080812-distrib.tar.gz 317350 RMD160 9ac2e6209b4b681fd8099c49be5fbd511a5da1a8 SHA1 0f63613324dbce931c9b38b84d8ede314730dc87 SHA256 7025f3cb30e5a3305a13d150f39a85580ade0bbf8169b25db65cbe396e201052 +EBUILD phrap-1.080812.ebuild 1437 RMD160 540efacfb3ed57ca5b8b0bb5e6c31b46bd4be851 SHA1 c95a680d5152406812cad333b86ce5b6425ba945 SHA256 8a2f3e9069e3d9f7d54b68b01436618471f0d9972f92191de485e23f25071383 +MISC ChangeLog 413 RMD160 b7e9bf3cc01af15f399acce3a2cf9bf211d2e9ff SHA1 07517cb6a51c7b8d670bbd0e255dd61ba3c0a189 SHA256 7c8553d5640e22e92d06483b6838b24c0f25b9c3d5acaa2968a039d10ed7e978 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/phrap/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/phrap/phrap-1.080812.ebuild b/sci-biology/phrap/phrap-1.080812.ebuild new file mode 100644 index 000000000000..8b1d86ffc2e2 --- /dev/null +++ b/sci-biology/phrap/phrap-1.080812.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/phrap-1.080812.ebuild,v 1.1 2008/12/31 00:28:51 weaver Exp $ + +DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities" +HOMEPAGE="http://www.phrap.org/" +SRC_URI="phrap-${PV}-distrib.tar.gz" + +LICENSE="phrap" +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}" + +RESTRICT="fetch" + +pkg_nofetch() { + einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file" + einfo "\"distrib.tar.gz\", then rename it to \"phrap-${PV}-distrib.tar.gz\"" + einfo "and put it in ${DISTDIR}" +} + +src_compile() { + sed -i 's/CFLAGS=/#CFLAGS=/' makefile + sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/env perl|' phrapview + emake || die "emake failed" +} + +src_install() { + dobin cluster cross_match loco phrap phrapview swat + for i in {general,phrap,swat}.doc ; do + newdoc ${i} ${i}.txt + done +} + +pkg_postinst() { + elog If you are operating a non-commercial \(academic or government\) + elog computer facility which provides access to several independent + elog investigators, you are required by the licensing agreement to set the + elog permissions on the executables and source code to allow execute but + elog not read access, so that the programs may not be copied. + elog + elog Phrap documentation is installed in ${ROOT}/usr/share/doc/${P}. +} |