diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/primer3/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/primer3/Manifest | 16 | ||||
| -rw-r--r-- | sci-biology/primer3/files/digest-primer3-1.1.1 | 3 | ||||
| -rw-r--r-- | sci-biology/primer3/primer3-1.1.1.ebuild | 33 |
4 files changed, 54 insertions, 5 deletions
diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog index 7222d16cf021..9ad8bc38fdfb 100644 --- a/sci-biology/primer3/ChangeLog +++ b/sci-biology/primer3/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/primer3 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.16 2007/06/28 14:36:23 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.17 2007/06/28 15:51:24 ribosome Exp $ + +*primer3-1.1.1 (28 Jun 2007) + + 28 Jun 2007; Olivier Fisette <ribosome@gentoo.org> +primer3-1.1.1.ebuild: + New upstream version. 28 Jun 2007; Olivier Fisette <ribosome@gentoo.org> primer3-1.0.0.ebuild, primer3-1.0.1.ebuild: diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest index 45944591eb44..1565c05a9c96 100644 --- a/sci-biology/primer3/Manifest +++ b/sci-biology/primer3/Manifest @@ -1,3 +1,4 @@ +DIST primer3-1.1.1.tar.gz 965103 RMD160 c339f779f7183c84db6b3a5104f5b0ba6269abed SHA1 5ebf6ea15b2a2e24e3807a30849405c477894771 SHA256 58eb0ac4a6537246b7111023c63d4e32022bd272adac9197c042abe0c2572d82 DIST primer3_1.0.0.tar.gz 936696 RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 SHA1 0227f1f26c8b45dff9033543bee4387ade173c73 SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b DIST primer3_1.0.1.tar.gz 902576 RMD160 aef14e5f3346c3a2c92e83620c5f1ecb4b5f7630 SHA1 ee8680e3ca38ab3675eb35ce576b6d9541ed9fd8 SHA256 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e EBUILD primer3-1.0.0.ebuild 837 RMD160 083fa071a61d9fefdc7986d9b832834b97f660b7 SHA1 3bd1b0ab99eb675ae7e3c33c9e18c7359bd6bcc5 SHA256 91ebee1871f34a70d65df703ea7dd6ad02a467a00c21a30265d1c1878bc6724b @@ -8,10 +9,14 @@ EBUILD primer3-1.0.1.ebuild 811 RMD160 996ced49e9106ceb7726147fdc9ab0bbbcc63e64 MD5 538141c15a7faa48690e10cb36de0e9d primer3-1.0.1.ebuild 811 RMD160 996ced49e9106ceb7726147fdc9ab0bbbcc63e64 primer3-1.0.1.ebuild 811 SHA256 464d62a61c619f230946236eda3152c58abc75015e49d17bd40d7390968bc0b3 primer3-1.0.1.ebuild 811 -MISC ChangeLog 2592 RMD160 2e7d0bdb3894821312a63118b05038a61b432cd4 SHA1 f1e1381caf549c036430f30ee67f6a0c32b0cc39 SHA256 a787a2861a6a253ed09069ac78f12ffc43daf73616215b159f6af1ee083ed33a -MD5 95ec67f82ce2691c7eacccf2f1f35768 ChangeLog 2592 -RMD160 2e7d0bdb3894821312a63118b05038a61b432cd4 ChangeLog 2592 -SHA256 a787a2861a6a253ed09069ac78f12ffc43daf73616215b159f6af1ee083ed33a ChangeLog 2592 +EBUILD primer3-1.1.1.ebuild 791 RMD160 863f43897a45754d044392cab78029064b6b62ef SHA1 9c09cee6c909f66604ac0252d3b6e6b56f9f1234 SHA256 93f656f95c5b01630b259b8fd662159612786fcdf5ff9c4e12e09722ccb44705 +MD5 89e6efc60ea5931493c9cf85f467d259 primer3-1.1.1.ebuild 791 +RMD160 863f43897a45754d044392cab78029064b6b62ef primer3-1.1.1.ebuild 791 +SHA256 93f656f95c5b01630b259b8fd662159612786fcdf5ff9c4e12e09722ccb44705 primer3-1.1.1.ebuild 791 +MISC ChangeLog 2723 RMD160 e0212c0568df1cfc1cae84e2c1cd26bd27968e1d SHA1 da6181df649450037646b576252fb7ea2240a682 SHA256 a804d5020eafadc741195b99fa38319c3a6700fea6c6fe6898df7a44dec78968 +MD5 d69bb25b86504d285d689f8a887eb6e7 ChangeLog 2723 +RMD160 e0212c0568df1cfc1cae84e2c1cd26bd27968e1d ChangeLog 2723 +SHA256 a804d5020eafadc741195b99fa38319c3a6700fea6c6fe6898df7a44dec78968 ChangeLog 2723 MISC metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 SHA1 7c1c44b75d2cf8549959e2947509e58cd6c433ed SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca MD5 8cdd554f8d2dc15deccdb6c23a375bab metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 metadata.xml 721 @@ -22,3 +27,6 @@ SHA256 e960b016d3d9583d0c812d4758b446570867e0a023366c91f83a0a0c8711ca9e files/di MD5 9dd523bada7c69e46ef3a3425cf20fb7 files/digest-primer3-1.0.1 241 RMD160 529fac4e385de34653a0830d05b1abf48ef6b6e9 files/digest-primer3-1.0.1 241 SHA256 b888cfd675fa02d2622f34216bc977c914a6eb4612c90307462f6c3b79d955d7 files/digest-primer3-1.0.1 241 +MD5 8e398d6e03cbd683851b0340a2d36994 files/digest-primer3-1.1.1 241 +RMD160 2e565dba8e5acb8782356b039c9337f35afd401a files/digest-primer3-1.1.1 241 +SHA256 fe551851aba46ffbbe4a4c2489a401cc0265c95a92d588db2e0d443a41a28298 files/digest-primer3-1.1.1 241 diff --git a/sci-biology/primer3/files/digest-primer3-1.1.1 b/sci-biology/primer3/files/digest-primer3-1.1.1 new file mode 100644 index 000000000000..5e151c58b803 --- /dev/null +++ b/sci-biology/primer3/files/digest-primer3-1.1.1 @@ -0,0 +1,3 @@ +MD5 4975b6281be35aac7c5d5cc5b52954c4 primer3-1.1.1.tar.gz 965103 +RMD160 c339f779f7183c84db6b3a5104f5b0ba6269abed primer3-1.1.1.tar.gz 965103 +SHA256 58eb0ac4a6537246b7111023c63d4e32022bd272adac9197c042abe0c2572d82 primer3-1.1.1.tar.gz 965103 diff --git a/sci-biology/primer3/primer3-1.1.1.ebuild b/sci-biology/primer3/primer3-1.1.1.ebuild new file mode 100644 index 000000000000..138a7e9a3c06 --- /dev/null +++ b/sci-biology/primer3/primer3-1.1.1.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.1.1.ebuild,v 1.1 2007/06/28 15:51:24 ribosome Exp $ + +DESCRIPTION="Design primers for PCR reactions." +HOMEPAGE="http://primer3.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" +LICENSE="whitehead" + +SLOT="0" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" +IUSE="" + +DEPEND="dev-lang/perl" + +RDEPEND="" + +S="${WORKDIR}/${P}/src" + +src_compile() { + emake -e || die +} + +src_test () { + make primer_test || die +} + +src_install () { + dobin long_seq_tm_test ntdpal oligotm primer3_core || die \ + "Could not install program." + dodoc ../{how-to-cite.txt,README.txt,example} || die \ + "Could not install documentation." +} |