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# ChangeLog for sci-biology/vienna-rna
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.50 2014/01/06 15:32:47 jlec Exp $
06 Jan 2014; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.5.ebuild:
Punt base.eclass
05 Sep 2013; Michał Górny <mgorny@gentoo.org> vienna-rna-2.1.1.ebuild:
Clean up PYTHON_COMPAT from old implementations.
29 May 2013; Justin Lecher <jlec@gentoo.org> vienna-rna-2.1.1.ebuild:
Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE)
*vienna-rna-2.1.1 (13 Feb 2013)
13 Feb 2013; Justin Lecher <jlec@gentoo.org> +vienna-rna-2.1.1.ebuild,
+files/vienna-rna-2.1.1-bindir.patch,
+files/vienna-rna-2.1.1-impl-decl.patch, +files/vienna-rna-2.1.1-prll.patch,
+files/vienna-rna-2.1.1-setup.py:
Version Bump; move to EAPI=5, new python eclasses; autotools-utils
31 Jan 2013; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.5.ebuild,
metadata.xml:
Only call distutils phase functions with USE=python, #422899
10 Jul 2012; Justin Lecher <jlec@gentoo.org> -vienna-rna-1.8.4-r1.ebuild,
-vienna-rna-1.8.4-r2.ebuild, metadata.xml:
Cleaned old
10 Jul 2012; Brent Baude <ranger@gentoo.org> vienna-rna-1.8.5.ebuild:
Marking vienna-rna-1.8.5 ppc for bug 393867
26 Feb 2012; Patrick Lauer <patrick@gentoo.org> vienna-rna-1.8.4-r1.ebuild,
vienna-rna-1.8.5.ebuild:
Restricting jython
21 Dec 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> vienna-rna-1.8.5.ebuild:
x86 stable wrt bug #393867
16 Dec 2011; Agostino Sarubbo <ago@gentoo.org> vienna-rna-1.8.5.ebuild:
Stable for AMD64, wrt bug #393867
16 Dec 2011; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.5.ebuild:
Add missing dep on dev-lang/swig, #394933
16 Dec 2011; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.5.ebuild:
Handle static-libs
28 Jun 2011; Brent Baude <ranger@gentoo.org> vienna-rna-1.8.4-r1.ebuild:
Marking vienna-rna-1.8.4-r1 ppc for bug 325459
03 May 2011; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.5.ebuild,
+files/vienna-rna-1.8.5-setup.py:
Added python support, #365793
20 Mar 2011; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.4-r1.ebuild,
vienna-rna-1.8.4-r2.ebuild, vienna-rna-1.8.5.ebuild:
Install Perl modules into vendor-dir, #349772
*vienna-rna-1.8.5 (20 Mar 2011)
20 Mar 2011; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.4-r1.ebuild,
vienna-rna-1.8.4-r2.ebuild, +vienna-rna-1.8.5.ebuild:
Version Bump
*vienna-rna-1.8.4-r2 (15 Oct 2010)
15 Oct 2010; Kacper Kowalik <xarthisius@gentoo.org>
-files/vienna-rna-1.7.2-disable-gd.patch,
-files/vienna-rna-1.7.2-gcc4.3.patch,
-files/vienna-rna-1.7.2-gcc4.4.patch, -vienna-rna-1.8.4.ebuild,
+vienna-rna-1.8.4-r2.ebuild, +files/vienna-rna-1.8.4-implicits.patch,
+files/vienna-rna-1.8.4-overflows.patch:
Fix buffer overflows wrt bug 341089. Thanks to Diego for the report. Fix
implicit function declarations. Drop old.
15 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
vienna-rna-1.8.4-r1.ebuild:
stable x86, bug 325459
26 Jun 2010; Christoph Mende <angelos@gentoo.org>
vienna-rna-1.8.4-r1.ebuild:
Stable on amd64 wrt bug #325459
*vienna-rna-1.8.4-r1 (25 Jun 2010)
25 Jun 2010; Justin Lecher <jlec@gentoo.org> -vienna-rna-1.7.2.ebuild,
-vienna-rna-1.8.3.ebuild, +vienna-rna-1.8.4-r1.ebuild,
+files/vienna-rna-1.8.4-bindir.patch:
Install ELFs in correct place, #300012
03 Apr 2010; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.4.ebuild,
+files/vienna-rna-1.8.4-jobserver-fix.patch:
jobserver fix, #304117, thanks Myckel
09 Feb 2010; Pacho Ramos <pacho@gentoo.org> vienna-rna-1.8.4.ebuild:
amd64 stable, bug 298769
29 Dec 2009; Christian Faulhammer <fauli@gentoo.org>
vienna-rna-1.8.4.ebuild:
stable x86, bug 298769
*vienna-rna-1.8.4 (13 Nov 2009)
13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +vienna-rna-1.8.4.ebuild:
Version bump
02 Nov 2009; Markus Meier <maekke@gentoo.org> vienna-rna-1.8.3.ebuild:
amd64/x86 stable, bug #290926
31 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> vienna-rna-1.8.3.ebuild:
Fix linking failure on x86
10 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> vienna-rna-1.8.3.ebuild:
Fix gcc-4.4 patching, bug 284539
*vienna-rna-1.8.3 (10 Sep 2009)
10 Sep 2009; Andrey Kislyuk <weaver@gentoo.org>
+files/vienna-rna-1.8.3-gcc4.3.patch, +vienna-rna-1.8.3.ebuild:
Version bump and cleanup
30 Jul 2009; Samuli Suominen <ssuominen@gentoo.org>
vienna-rna-1.7.2.ebuild, +files/vienna-rna-1.7.2-gcc4.4.patch:
Fix building with GCC 4.4 and GLIBC 2.10+ wrt #274044. Rename getline to
v_getline. Missing include.
09 Oct 2008; Markus Dittrich <markusle@gentoo.org>
vienna-rna-1.7.2.ebuild:
Remove perlocal.pod file to avoid file collisions (see bug #240358).
06 Oct 2008; Markus Dittrich <markusle@gentoo.org>
+files/vienna-rna-1.7.2-LDFLAGS.patch,
+files/vienna-rna-1.7.2-disable-gd.patch, vienna-rna-1.7.2.ebuild:
Fixed ignored LDFLAGS issues and bogus detection of GD support. Also
enabled the tests that come with the package.
*vienna-rna-1.7.2 (28 Aug 2008)
28 Aug 2008; Markus Dittrich <markusle@gentoo.org>
+files/vienna-rna-1.7.2-gcc4.3.patch, -vienna-rna-1.6.1.ebuild,
-vienna-rna-1.6.5.ebuild, +vienna-rna-1.7.2.ebuild:
Version bump and removed old ebuilds (fixes bug #235943). Thanks much to
Chad A. Simmons <chad.simmons@member.fsf.org> for his ebuild and patches.
06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.
*vienna-rna-1.7.0 (01 May 2008)
01 May 2008; Markus Dittrich <markusle@gentoo.org>
+vienna-rna-1.7.0.ebuild:
Version bump.
*vienna-rna-1.6.5 (24 Nov 2007)
24 Nov 2007; Markus Dittrich <markusle@gentoo.org>
+files/vienna-rna-1.6.5-c-fixes.patch, +vienna-rna-1.6.5.ebuild:
Version bump (fixes bug #191882).
29 Apr 2007; Jeff Gardner <je_fro@gentoo.org> vienna-rna-1.6.1.ebuild:
Adding ~amd64.
22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
Redigest for Manifest2
03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -vienna-rna-1.6.ebuild:
Pruned old version.
14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Stepping down from maintaining this package.
*vienna-rna-1.6.1 (14 Sep 2006)
14 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+vienna-rna-1.6.1.ebuild:
New upstream version.
*vienna-rna-1.6 (03 Feb 2006)
03 Feb 2006; Olivier Fisette <ribosome@gentoo.org>
-vienna-rna-1.5_beta.ebuild, -vienna-rna-1.6_alpha.ebuild,
+vienna-rna-1.6.ebuild:
Removed alpha and beta versions. New version. Removed dependency on X11.
*vienna-rna-1.6_alpha (19 Oct 2005)
19 Oct 2005; Olivier Fisette <ribosome@gentoo.org>
+vienna-rna-1.6_alpha.ebuild:
New version.
30 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
vienna-rna-1.5_beta.ebuild:
Added to x86.
30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> vienna-rna-1.4.ebuild:
Ebuild cleanup.
*vienna-rna-1.5_beta (09 Jan 2005)
09 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+vienna-rna-1.5_beta.ebuild:
Added new beta release (hard-masked).
*vienna-rna-1.4 (23 Dec 2004)
23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+vienna-rna-1.4.ebuild:
Moved from app-sci/vienna-rna to sci-biology/vienna-rna.
31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> vienna-rna-1.4.ebuild:
Added to x86.
23 Jun 2004; David Holm <dholm@gentoo.org> vienna-rna-1.4.ebuild:
Added to ~ppc.
*vienna-rna-1.4 (22 Jun 2004)
22 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
vienna-rna-1.4.ebuild, metadata.xml :
Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
Reference: Gentoo Bugzilla, bug #53734
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