sci-biology/clustalx: Make sure only system libs are used

Package-Manager: portage-2.2.8/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 68 insertions, 9 deletions

diff --git a/sci-biology/clustalx/ChangeLog b/sci-biology/clustalx/ChangeLog
index 13830d677d82..fc44ff6df259 100644
--- a/sci-biology/clustalx/ChangeLog
+++ b/sci-biology/clustalx/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/clustalx
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.29 2013/03/11 15:02:36 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.30 2014/01/06 08:33:15 jlec Exp $
+
+*clustalx-2.1-r1 (06 Jan 2014)
+
+  06 Jan 2014; Justin Lecher <jlec@gentoo.org> +clustalx-2.1-r1.ebuild:
+  Make sure only system libs are used
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> -clustalx-1.83-r2.ebuild,
   metadata.xml:
diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest
index 839b48bc5d75..782d7dd83dde 100644
--- a/sci-biology/clustalx/Manifest
+++ b/sci-biology/clustalx/Manifest
@@ -1,14 +1,25 @@
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-Hash: SHA256
+Hash: SHA512
 
-DIST clustalx-2.1.tar.gz 341649 SHA256 e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05
+DIST clustalx-2.1.tar.gz 341649 SHA256 e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 SHA512 e8cbad783722161de6999ab01a91d555fc10db609197a8d2878f91e9d7dc998784c02d2ccb54c4936ee27b41321db6f4f37021221662f483b8b6d945b6e1c026 WHIRLPOOL 6cbe8dcf2be3a535e8ac0ef0b9b476d4429a80bd94b394c0194f46ed039f9ac2b97b0ec2ed680838a0973b3187b2dbc90285733657975e03288b9840ba3d6b15
+EBUILD clustalx-2.1-r1.ebuild 1211 SHA256 cff350a9fd51109da3b8b66eb1e522692a6e94e9ac7c18b0f744346325ead01f SHA512 b63200760f9cd27f8b24f49ee75b33d91cca30ab7d481f177dbf8665e30dcb2fdc527a9367bf21ebb37a37de498b45222c9d0ff2a0152b5e534d61b4fb495f4f WHIRLPOOL d5470790fc08587c0dbf665bdf460e6972e200909755bed481b05b7cc13d10cd979927aa6b2217a7ec4ec50b5d916fba162e84d53aa11ee0e8bdb095e9776272
 EBUILD clustalx-2.1.ebuild 1145 SHA256 ce7958e660ea79a47cd4956972eca3993eb45f6824fc29813d04d7b524f88a6b SHA512 6e754244290dbbdc04ff76c50704ece6a28c3add64d6efa6d178a2646af4ae75d903e9a710a80d40e10aa8141c53705d3b2ccbfdc3230585843bc6ee17a99af9 WHIRLPOOL ea8e4acafa4d948671eebaaccfff9d6da37bc280ee7797bd9a15ba90f1846c2b4094b410d220f9d2ead90b86e8fc2608eafb3d450a74689be7c34451918e1031
-MISC ChangeLog 4843 SHA256 78a1ee3dd7fbb9f7db39e97b0e2e9d87e02c3dda8884838c743501b8e8516bb2 SHA512 eecf8ce0caf3a5fb2a51bf8d97f6074eed0b038c0e2cc77860f0b33eea454d784f35b6048234acc8ed447748b61eacc608452cffa51cf221303458cf0200b6a8 WHIRLPOOL d3033ba7551ca22d6cdac70780ccea24d98208e9ca1eb8f26cd58c8b530df275e0462291a0112f4f7cf010b86e142348f457a5917abce27ffbd2c36eb8e0ce6d
+MISC ChangeLog 4986 SHA256 20048d9f00af8429c5024eb41d177054dc6a674670d57b00f274ae37de5ba566 SHA512 c61fa91a10f63d726ac49a9f67e0d60d76fbc4267da52111944d3b9e338f75b726d1614b4aace191c2d6a176abfff85d6233a2f6b5844f964b4517af0ca8f224 WHIRLPOOL d996eda84a9b9ce89b70d2815438c27e2f7d27b9ab2ba540d90f59124bf28c6e44bdc071d1dfcb64fe2a5d730dc1e620b165fe1c578943888a87976bd78a3580
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/clustalx/clustalx-2.1-r1.ebuild b/sci-biology/clustalx/clustalx-2.1-r1.ebuild
new file mode 100644
index 000000000000..c685633a4461
--- /dev/null
+++ b/sci-biology/clustalx/clustalx-2.1-r1.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-2.1-r1.ebuild,v 1.1 2014/01/06 08:33:15 jlec Exp $
+
+EAPI=5
+
+inherit eutils qt4-r2
+
+DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
+HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz"
+
+LICENSE="GPL-3 LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="
+	dev-qt/qtcore:4
+	dev-qt/qtgui:4"
+RDEPEND="${DEPEND}
+	>=sci-biology/clustalw-${PV}"
+
+src_prepare() {
+	sed \
+		-e "s|colprot.xml|${EPREFIX}/usr/share/${PN}/colprot.xml|" \
+		-e "s|coldna.xml|${EPREFIX}/usr/share/${PN}/coldna.xml|" \
+		-e "s|colprint.xml|${EPREFIX}/usr/share/${PN}/colprint.xml|" \
+		-i ClustalQtParams.h || \
+		die "Failed to patch shared files location."
+	sed \
+		-e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
+		-i HelpDisplayWidget.cpp || \
+		die "Failed to patch help file location."
+	rm -rf usr || die
+}
+
+src_install() {
+	dobin clustalx
+	insinto /usr/share/${PN}
+	doins colprot.xml coldna.xml colprint.xml clustalx.hlp
+	make_desktop_entry ${PN} ClustalX
+}